Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1057 ATGGCTCCTTCTTTCGTATTCGACCCCCAAAGCGACGAAGAAGTAGAACACTACGAATCTGAACAAGACAATGATGAAAACTCAGAACCAGAATCAGAAGATGATTACGATGTTGATGATCCTGAATCAGAAGAACTTGATGAAGATAAACAAGAACCACGAAGAATACCAGTTACCAATAAGAAAACACAATCTCCTTGGGATTTCGCTAAATACTCTGAGTCTGTTGCTGAAGAACACTCGCGTCGAAGCACAACTTCAGTTGATGACAAAATCTCTAAAGTCATCAAACAACGTTCGGTTCCGCTCACAGTTCCTATACAAGAAGATGATACTGATATCTCAGATTCTGAACCAGAAGATAAACAAGAGGATTATAGACCAGAAGAGGAAGATGAAGAAGATGATAATGTTGGTGACAACAAGCCCTTTTTTGCTCCTTCTGATGGAGCTTCTTTCGATGCTGATTCATTCATGCAGCTTAATTTGTCCCGACCTTTGCTTCGGGCTTGTGAAGCTCTGGGGTATGCTAAGCCAACACCAATTCAGGCAGCCTGTGTTCCACTTGCATTGACTGGTCGTGATATTTGCGGAAGTGCCATCACTGGATCTGGGAAGACAGCCGCATTTGCACTACCCACTTTGGAGAGGTTGTTGTTCCGTCCAAAACGTATGCATGCAATAAGGGTTCTCATTCTCACTCCAACCAGAGAGTTGGCTGTTCAAGTTCACAGTATGATAGAGAAGCTCGCTCAGTTTACTGACATCAGGTGTTGCCTGGTTGTTGGAGGTCTATCAACAAAGGTCCAAGAGGTTGCATTGAGATCAATGCCAGACATTGTTGTAGCTACTCCAGGACGAATGATAGACCATTTACGGAATTCTATGTCAGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCTGACCGTCTTTTAGAGCTTGGATTTAGTGCTGAAATTCAGGAACTTGTTCGCTCCTGTCCAAAAAAAAGGCAGACAATGCTATTTTCAGCAACCATGACTGAGGAGGTTGATGAGCTTATTAAACTTTCCCTGTCAAAACCCTTGCGTCTTTCTGCTGACCCATCTGCAAAGCGACCAGCAACCTTAACTGAGGAGGTTGTTAGGATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTGCTAGAGTGATCATCTTCAGTGGGACAAAGCAGGCGGCACATAGGTTGAAAATTATATTTGGATTAGCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCACAGCGGCTTGAAGCTTTGGAACAGTTCAGAAAGCAGGAAGTTGATTTTTTGATTGCAACTGATGTGGCTGCTCGTGGTCTTGATATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACCGCAAGAGCGGGGAGAGAAGGATATGCTGTCACATTTGTGACCGATAATGACCGGTCACTTCTAAAAGCCATTGCAAAGAGAGCTGGTTCAAAGCTGAAGAGCCGTATTGTTGCAGAGCAATCTATACTTAAATGGTCTCATATGATTGAGCAAATGGAGGATCAAGTTGCTGAAGTACTTCAAGAAGAGAGGGAAGAAAGAGTCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTACGCATCGGGAAGAGATATATTCCCGCCCTAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAGAAGCTTGGTGCAAAAGCAGTAAAGGCATCTATGGATAAGGGAAGGAATTCTGGAAAGGAGGTAATTAGTGCCGAACAAGCAGATGATATCAAAATGAAGGAAAAGAGGAAGCGGGAGCGAGAGAAAAATTTGCCTAGAAGGATGCGTAGAAAATTGGAAGCCTCTAGAGAGATGTTGGAGGACGATGAGCAAGAAGCTAAGGGGTCAAATAAGAAAGAAAAGGGTGGAATGACACTTGTTGATCTTGCTTACCGGCGGGCAAAAGCGGTGAAGGCTGTCAAGAAGGCTCTAGACAATGGAAAAATTGTCAAGAGTAAAAAGAAATCCAGTCGTCCTCCTCAAAAGACTTCTTCAAGGACAGAAGAGATGCGGGAGCTATTCCAGACTGAGATAAAGGATAAAAAGCCAAAAGGAAGAGGTGATGGAGCAGCAAAGAAGTCCAAGAAGAGTTCATTCAAAAGCAAGTCTAGGCACACAATCACTGTTTAG 2277 0.4335 MAPSFVFDPQSDEEVEHYESEQDNDENSEPESEDDYDVDDPESEELDEDKQEPRRIPVTNKKTQSPWDFAKYSESVAEEHSRRSTTSVDDKISKVIKQRSVPLTVPIQEDDTDISDSEPEDKQEDYRPEEEDEEDDNVGDNKPFFAPSDGASFDADSFMQLNLSRPLLRACEALGYAKPTPIQAACVPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEVALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIQELVRSCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSAKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTARVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQEVDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSHMIEQMEDQVAEVLQEEREERVLRKAEMEATKAENMITHREEIYSRPKRTWFVTEKEKKLGAKAVKASMDKGRNSGKEVISAEQADDIKMKEKRKREREKNLPRRMRRKLEASREMLEDDEQEAKGSNKKEKGGMTLVDLAYRRAKAVKAVKKALDNGKIVKSKKKSSRPPQKTSSRTEEMRELFQTEIKDKKPKGRGDGAAKKSKKSSFKSKSRHTITV 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1057 758 Coils Coil 645 668 - -
Lal11g1057 758 PANTHER BNAA01G17110D PROTEIN 57 713 - -
Lal11g1057 758 Pfam DEAD/DEAH box helicase 180 350 IPR011545 GO:0003676|GO:0005524
Lal11g1057 758 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Lal11g1057 758 Gene3D - 119 363 IPR027417 -
Lal11g1057 758 MobiDBLite consensus disorder prediction 1 146 - -
Lal11g1057 758 SMART helicmild6 411 496 IPR001650 -
Lal11g1057 758 MobiDBLite consensus disorder prediction 710 744 - -
Lal11g1057 758 PANTHER RNA HELICASE 57 713 - -
Lal11g1057 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 516 IPR027417 -
Lal11g1057 758 SMART ultradead3 175 376 IPR014001 -
Lal11g1057 758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 535 IPR001650 -
Lal11g1057 758 MobiDBLite consensus disorder prediction 683 701 - -
Lal11g1057 758 CDD SF2_C_DEAD 373 505 - -
Lal11g1057 758 Coils Coil 534 574 - -
Lal11g1057 758 MobiDBLite consensus disorder prediction 73 96 - -
Lal11g1057 758 MobiDBLite consensus disorder prediction 602 670 - -
Lal11g1057 758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 361 IPR014001 -
Lal11g1057 758 MobiDBLite consensus disorder prediction 14 47 - -
Lal11g1057 758 MobiDBLite consensus disorder prediction 111 138 - -
Lal11g1057 758 Pfam Helicase conserved C-terminal domain 393 496 IPR001650 -
Lal11g1057 758 MobiDBLite consensus disorder prediction 602 758 - -
Lal11g1057 758 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 307 315 IPR000629 -
Lal11g1057 758 CDD DEADc_DDX27 167 362 - -
Lal11g1057 758 Gene3D - 383 611 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1057 Lal-Chr11 14163240 14171870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1057 111 513 Eukaryotic Initiation Factors Gene Family AT3G13920 33.088 1.01e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1057 K13181 - gmx:100776684 1129.78