Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal11g1057 | ATGGCTCCTTCTTTCGTATTCGACCCCCAAAGCGACGAAGAAGTAGAACACTACGAATCTGAACAAGACAATGATGAAAACTCAGAACCAGAATCAGAAGATGATTACGATGTTGATGATCCTGAATCAGAAGAACTTGATGAAGATAAACAAGAACCACGAAGAATACCAGTTACCAATAAGAAAACACAATCTCCTTGGGATTTCGCTAAATACTCTGAGTCTGTTGCTGAAGAACACTCGCGTCGAAGCACAACTTCAGTTGATGACAAAATCTCTAAAGTCATCAAACAACGTTCGGTTCCGCTCACAGTTCCTATACAAGAAGATGATACTGATATCTCAGATTCTGAACCAGAAGATAAACAAGAGGATTATAGACCAGAAGAGGAAGATGAAGAAGATGATAATGTTGGTGACAACAAGCCCTTTTTTGCTCCTTCTGATGGAGCTTCTTTCGATGCTGATTCATTCATGCAGCTTAATTTGTCCCGACCTTTGCTTCGGGCTTGTGAAGCTCTGGGGTATGCTAAGCCAACACCAATTCAGGCAGCCTGTGTTCCACTTGCATTGACTGGTCGTGATATTTGCGGAAGTGCCATCACTGGATCTGGGAAGACAGCCGCATTTGCACTACCCACTTTGGAGAGGTTGTTGTTCCGTCCAAAACGTATGCATGCAATAAGGGTTCTCATTCTCACTCCAACCAGAGAGTTGGCTGTTCAAGTTCACAGTATGATAGAGAAGCTCGCTCAGTTTACTGACATCAGGTGTTGCCTGGTTGTTGGAGGTCTATCAACAAAGGTCCAAGAGGTTGCATTGAGATCAATGCCAGACATTGTTGTAGCTACTCCAGGACGAATGATAGACCATTTACGGAATTCTATGTCAGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCTGACCGTCTTTTAGAGCTTGGATTTAGTGCTGAAATTCAGGAACTTGTTCGCTCCTGTCCAAAAAAAAGGCAGACAATGCTATTTTCAGCAACCATGACTGAGGAGGTTGATGAGCTTATTAAACTTTCCCTGTCAAAACCCTTGCGTCTTTCTGCTGACCCATCTGCAAAGCGACCAGCAACCTTAACTGAGGAGGTTGTTAGGATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTGCTAGAGTGATCATCTTCAGTGGGACAAAGCAGGCGGCACATAGGTTGAAAATTATATTTGGATTAGCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCACAGCGGCTTGAAGCTTTGGAACAGTTCAGAAAGCAGGAAGTTGATTTTTTGATTGCAACTGATGTGGCTGCTCGTGGTCTTGATATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACCGCAAGAGCGGGGAGAGAAGGATATGCTGTCACATTTGTGACCGATAATGACCGGTCACTTCTAAAAGCCATTGCAAAGAGAGCTGGTTCAAAGCTGAAGAGCCGTATTGTTGCAGAGCAATCTATACTTAAATGGTCTCATATGATTGAGCAAATGGAGGATCAAGTTGCTGAAGTACTTCAAGAAGAGAGGGAAGAAAGAGTCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTACGCATCGGGAAGAGATATATTCCCGCCCTAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAGAAGCTTGGTGCAAAAGCAGTAAAGGCATCTATGGATAAGGGAAGGAATTCTGGAAAGGAGGTAATTAGTGCCGAACAAGCAGATGATATCAAAATGAAGGAAAAGAGGAAGCGGGAGCGAGAGAAAAATTTGCCTAGAAGGATGCGTAGAAAATTGGAAGCCTCTAGAGAGATGTTGGAGGACGATGAGCAAGAAGCTAAGGGGTCAAATAAGAAAGAAAAGGGTGGAATGACACTTGTTGATCTTGCTTACCGGCGGGCAAAAGCGGTGAAGGCTGTCAAGAAGGCTCTAGACAATGGAAAAATTGTCAAGAGTAAAAAGAAATCCAGTCGTCCTCCTCAAAAGACTTCTTCAAGGACAGAAGAGATGCGGGAGCTATTCCAGACTGAGATAAAGGATAAAAAGCCAAAAGGAAGAGGTGATGGAGCAGCAAAGAAGTCCAAGAAGAGTTCATTCAAAAGCAAGTCTAGGCACACAATCACTGTTTAG | 2277 | 0.4335 | MAPSFVFDPQSDEEVEHYESEQDNDENSEPESEDDYDVDDPESEELDEDKQEPRRIPVTNKKTQSPWDFAKYSESVAEEHSRRSTTSVDDKISKVIKQRSVPLTVPIQEDDTDISDSEPEDKQEDYRPEEEDEEDDNVGDNKPFFAPSDGASFDADSFMQLNLSRPLLRACEALGYAKPTPIQAACVPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEVALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIQELVRSCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSAKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTARVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQEVDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSHMIEQMEDQVAEVLQEEREERVLRKAEMEATKAENMITHREEIYSRPKRTWFVTEKEKKLGAKAVKASMDKGRNSGKEVISAEQADDIKMKEKRKREREKNLPRRMRRKLEASREMLEDDEQEAKGSNKKEKGGMTLVDLAYRRAKAVKAVKKALDNGKIVKSKKKSSRPPQKTSSRTEEMRELFQTEIKDKKPKGRGDGAAKKSKKSSFKSKSRHTITV | 758 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal11g1057 | 758 | Coils | Coil | 645 | 668 | - | - | |
Lal11g1057 | 758 | PANTHER | BNAA01G17110D PROTEIN | 57 | 713 | - | - | |
Lal11g1057 | 758 | Pfam | DEAD/DEAH box helicase | 180 | 350 | IPR011545 | GO:0003676|GO:0005524 | |
Lal11g1057 | 758 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 156 | 184 | IPR014014 | GO:0003724 | |
Lal11g1057 | 758 | Gene3D | - | 119 | 363 | IPR027417 | - | |
Lal11g1057 | 758 | MobiDBLite | consensus disorder prediction | 1 | 146 | - | - | |
Lal11g1057 | 758 | SMART | helicmild6 | 411 | 496 | IPR001650 | - | |
Lal11g1057 | 758 | MobiDBLite | consensus disorder prediction | 710 | 744 | - | - | |
Lal11g1057 | 758 | PANTHER | RNA HELICASE | 57 | 713 | - | - | |
Lal11g1057 | 758 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 228 | 516 | IPR027417 | - | |
Lal11g1057 | 758 | SMART | ultradead3 | 175 | 376 | IPR014001 | - | |
Lal11g1057 | 758 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 372 | 535 | IPR001650 | - | |
Lal11g1057 | 758 | MobiDBLite | consensus disorder prediction | 683 | 701 | - | - | |
Lal11g1057 | 758 | CDD | SF2_C_DEAD | 373 | 505 | - | - | |
Lal11g1057 | 758 | Coils | Coil | 534 | 574 | - | - | |
Lal11g1057 | 758 | MobiDBLite | consensus disorder prediction | 73 | 96 | - | - | |
Lal11g1057 | 758 | MobiDBLite | consensus disorder prediction | 602 | 670 | - | - | |
Lal11g1057 | 758 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 187 | 361 | IPR014001 | - | |
Lal11g1057 | 758 | MobiDBLite | consensus disorder prediction | 14 | 47 | - | - | |
Lal11g1057 | 758 | MobiDBLite | consensus disorder prediction | 111 | 138 | - | - | |
Lal11g1057 | 758 | Pfam | Helicase conserved C-terminal domain | 393 | 496 | IPR001650 | - | |
Lal11g1057 | 758 | MobiDBLite | consensus disorder prediction | 602 | 758 | - | - | |
Lal11g1057 | 758 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 307 | 315 | IPR000629 | - | |
Lal11g1057 | 758 | CDD | DEADc_DDX27 | 167 | 362 | - | - | |
Lal11g1057 | 758 | Gene3D | - | 383 | 611 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal11g1057 | Lal-Chr11 | 14163240 | 14171870 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal11g1057 | 111 | 513 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 33.088 | 1.01e-52 | 187 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal11g1057 | K13181 | - | gmx:100776684 | 1129.78 |