Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1025 ATGATGGCGACAACGTCGGTGGTTCCGGCGAACCGGAGGAGGGCGGCGTTAGAGGCGGAGGATGCGGATTTCGAGACGACGGAGGGAGTAAAAGTGATAGGGAGCTTTGAGGAGATGGGAATAAAAGATGATCTTCTTAGAGGAATTTATCAATACGGTTTTGAGAAACCTTCCGCTATTCAACAACGGGCCGTGACGCCAATCATACAGGGCCGTGACGTCATCGCTCAGGCCCAGTCCGGTACCGGAAAAACTTCCATGATTGCCCTCACTGTTTGTCAGATAGTTGATACCTCCGTTCGAGAGGTGCAAGCCTTAATAGTGTCTCCTACAAGGGAACTGGCTTCACAGACTGAAAAGGTTATATTAGCAATTGGGGACTTCATTAATATACAAGCACATGCATGTGTTGGTGGTAAAAGTGTTGGAGAAGATATAAGGAAGCTTGAGTATGGAGTTCATGTGGTATCTGGAACTCCAGGACGGGTTTGTGACATGATCAAAAGGAGAACATTGCGCACAAGAGCTATCAAGTTGCTAGTTCTGGATGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCAGACCTTCAGGTGGTCTTGATTTCTGCTACTCTTCCTCATGAAATACTGGAGATAACAAATAAGTTCATGACAGATCCAGTAAGGATCCTTGTAAAGCGTGATGAATTGACATTGGAGGGCATCAAACAATTTTTTGTTGCTGTTGAGAGGGAGGAATGGAAGTTTGATACTCTATGTGATCTTTATGATACTCTTACTATCACTCAGGCTGTTATATTCTGTAACACTAAACGAAAGGTAGACTGGTTAACTGAAAAAATGCGTAACAATAATTTCACCGTCTCAGCAATGCATGGGGACATGCCTCAGAAAGAAAGAGATGCAATTATGGCAGAGTTTCGTTCTGGTACAACCCGTGTGCTAATAACAACAGATGTTTGGGCTCGTGGCCTTGATGTTTCTCTAGTTATCAACTATGACCTCCCAAATAATCGAGAGCTTTACATTCATCGAATTGGCCGCTCTGGACGTTTTGGACGCAAGGGTGTTGCAATAAACTTTGTTAAGAGTGATGATATCAAGATATTGAGAGATATTGAGCAATATTACAGTACTCAGATTGATGAAATGCCAATGAACGTTGCTGATCTTATATGA 1215 0.4272 MMATTSVVPANRRRAALEAEDADFETTEGVKVIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQIVDTSVREVQALIVSPTRELASQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSAMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1025 404 Gene3D - 19 238 IPR027417 -
Lal11g1025 404 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 17 397 - -
Lal11g1025 404 SMART ultradead3 53 250 IPR014001 -
Lal11g1025 404 Gene3D - 239 404 IPR027417 -
Lal11g1025 404 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 65 235 IPR014001 -
Lal11g1025 404 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 34 62 IPR014014 GO:0003724
Lal11g1025 404 Pfam DEAD/DEAH box helicase 59 221 IPR011545 GO:0003676|GO:0005524
Lal11g1025 404 CDD DEADc_EIF4AIII_DDX48 36 236 - -
Lal11g1025 404 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 404 IPR001650 -
Lal11g1025 404 PANTHER BNAC03G41130D PROTEIN 17 397 - -
Lal11g1025 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 387 IPR027417 -
Lal11g1025 404 CDD SF2_C_DEAD 247 374 - -
Lal11g1025 404 Pfam Helicase conserved C-terminal domain 260 365 IPR001650 -
Lal11g1025 404 SMART helicmild6 287 365 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1025 Lal-Chr11 13801062 13805360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1025 16 404 Eukaryotic Initiation Factors Gene Family AT3G19760 86.224 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1025 K13025 - gmx:100795032 751.125