Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0936 ATGATTATTTGGGAGATGTTGGCCTCTCCTCATGATTGGGCAGTCTTTTGTAGGCAAAGGTTCGATAATTGGTTGGATGATCCTCTAGTTGAGATACTTCAAATTCCTGAAACCCTGCACAATTCTCTTATAGCCAAGGTGGCGGATTTTTATGAAGGTAATAATTGGCTCATTCCTCAGTTATTGTTTAATAAATGTTCGCAACTTGGTGCTAGAATTTCTCAAATTCAGCCTACAATTGATAGAGACAGGCTCATTTGGACTGGTACAAATGATGGCATTCTAACTCTGAAAGAGTCCTATAATTGTCTTAGTTCTATTAGTTCTACGCCTAGTTGGTGCAAAATCATTTGGTCTAATGCTAATCCTCCTTCAAAATCTTTCACAACGTGGAGGCTTATTCATCAGAGAATGGCCACTGATGAAAATCTTATGAGTAGGGGTTGCTCTATGGCTTCAAAGTGCAGTTTGTATAATGCAAATGTTGAATCTTCTGATCACCTGTTCTTGGCTTGTCCTTTTTCTATCATAATTTGGCAGCTGTCCTGCAGTTGCTGCTGTTCTGTTTTTGGTTTCCTTTTTAATGTATATCCCACCCATCCTCCTTTGAATGAAGAGTGGTCTAGACCACAATCTTATAATCATGCTGCTAATGTTGGTGGATATGTTGTTGATGGTCGCAGAGAATTCTTGGCAAGTGGTGTTGAAGGTTCAAGTTCTGCTCTCATTTGTGCTGCAGGCAACTGCCACAAAAACTTCCACAAAAAAGAGTGA 774 0.3966 MIIWEMLASPHDWAVFCRQRFDNWLDDPLVEILQIPETLHNSLIAKVADFYEGNNWLIPQLLFNKCSQLGARISQIQPTIDRDRLIWTGTNDGILTLKESYNCLSSISSTPSWCKIIWSNANPPSKSFTTWRLIHQRMATDENLMSRGCSMASKCSLYNANVESSDHLFLACPFSIIIWQLSCSCCCSVFGFLFNVYPTHPPLNEEWSRPQSYNHAANVGGYVVDGRREFLASGVEGSSSALICAAGNCHKNFHKKE 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0936 257 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 208 257 IPR006456 -
Lal11g0936 257 Pfam zinc-binding in reverse transcriptase 97 179 IPR026960 -
Lal11g0936 257 Pfam ZF-HD protein dimerisation region 214 257 IPR006456 -
Lal11g0936 257 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 214 257 IPR006456 -
Lal11g0936 257 PANTHER MINI ZINC FINGER PROTEIN 2-LIKE 214 257 - -
Lal11g0936 257 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 214 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0936 Lal-Chr11 12663865 12664770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0936 214 257 ZF-HD Transcription Factor Family AT1G74660 70.455 5.11e-17 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal11g0936 zf-RVT 5.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0936 - - lang:109353840 177.563