Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0891 ATGCAATCCAAGTCTGAAACAAATGGAATGAGATCGGATCCACGTTCCTTTCAACCGAGCATTGGCTATGCTGAACATTGGTGGCGTGGAATTGGGTACAATCCCATCGCCCAAACAATGTCCAAGGCAAACACAACCAATTCATCCTCTCTTGATTGCCCTAATGGTGATTCAGAATCCAATGAAGAAGGTCAGTCTTTGTCCAATAATGGATTGAATGAGGAAGATGATGGTGCTACTAAAGATTCCCAACATGCTGCTTCTAATCAAACAGAAAATTATGGGCAAGAACAAAAAGGGATGCAGCATACTTCAGCATCTGCAACTTCTGTGCGTGAAGAAGGCCCTACTCAGACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGCAAGTCTTTGCCTTTATTTTATCACTTTTTTGACATACACAGACCTGGCATGTGCTACAACTCCTTATCAAGATCCGTACTATGGGGGCATGATGGCACCTTATGGACACCAGCCGTTGGGATATGCTCCTTTTATGGGAATGCCTCATGCAAGAATGCCTTTACCCCTTGAGATGGCACAAGAGCCTGTTTATGTGAATGCGAAACAATACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAGGCAGAACTTGAAAGGAAGCTAATAAAAGCTAGAAAGCCGTATCTACATGAGTCTCGTCATCAGCATGCTATGAGAAGGGCAAGGGGTAGTGGAGGACGTTTTGCAAAGAAATCTGATGCGGAGGCCTCAGGCAAGGATATGGGTTCTGTTCCTGTCCTCTCATCACAATCAATCAGCTCATCTGGTTCTGAACCTTTACCTTCTGACTCTGCTGAAACCTGGAATTCTCCTAACATGCTGCAACAAGATGTAAGAGGATCAAAAGCGCACAGCAGGTTCGAAGTACCCAATTATGAAAACAATAGTGACTCCTACCACAATCATAATGGTTTGCAATCTTCAACTTATCGTAAGCATTCGGGTGAAGGAGCGGAGGAAGGTGACTGTTCTGGTCAGCAAAGGGGAAGCATATCTTCTGAGCACGCCTCACAGAGGCGTCTTGCTATACTGTAG 1089 0.45 MQSKSETNGMRSDPRSFQPSIGYAEHWWRGIGYNPIAQTMSKANTTNSSSLDCPNGDSESNEEGQSLSNNGLNEEDDGATKDSQHAASNQTENYGQEQKGMQHTSASATSVREEGPTQTPQLELVGHSIASLCLYFITFLTYTDLACATTPYQDPYYGGMMAPYGHQPLGYAPFMGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKARKPYLHESRHQHAMRRARGSGGRFAKKSDAEASGKDMGSVPVLSSQSISSSGSEPLPSDSAETWNSPNMLQQDVRGSKAHSRFEVPNYENNSDSYHNHNGLQSSTYRKHSGEGAEEGDCSGQQRGSISSEHASQRRLAIL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0891 362 MobiDBLite consensus disorder prediction 42 74 - -
Lal11g0891 362 MobiDBLite consensus disorder prediction 42 119 - -
Lal11g0891 362 ProSitePatterns NF-YA/HAP2 subunit signature. 194 214 IPR018362 GO:0003677|GO:0016602
Lal11g0891 362 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 353 - -
Lal11g0891 362 MobiDBLite consensus disorder prediction 224 288 - -
Lal11g0891 362 PRINTS CCAAT-binding transcription factor subunit B signature 192 214 IPR001289 GO:0003700|GO:0006355
Lal11g0891 362 PRINTS CCAAT-binding transcription factor subunit B signature 223 246 IPR001289 GO:0003700|GO:0006355
Lal11g0891 362 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 353 IPR001289 GO:0003700|GO:0006355
Lal11g0891 362 SMART cbf3 188 249 IPR001289 GO:0003700|GO:0006355
Lal11g0891 362 MobiDBLite consensus disorder prediction 83 119 - -
Lal11g0891 362 MobiDBLite consensus disorder prediction 224 243 - -
Lal11g0891 362 ProSiteProfiles NF-YA/HAP2 family profile. 189 249 IPR001289 GO:0003700|GO:0006355
Lal11g0891 362 MobiDBLite consensus disorder prediction 261 288 - -
Lal11g0891 362 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 191 246 IPR001289 GO:0003700|GO:0006355
Lal11g0891 362 Gene3D - 189 251 - -
Lal11g0891 362 MobiDBLite consensus disorder prediction 307 330 - -
Lal11g0891 362 MobiDBLite consensus disorder prediction 307 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0891 Lal-Chr11 11662660 11668151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0891 16 288 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.825 3.41e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal11g0891 CBFB_NFYA 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0891 K08064 - gmx:100808378 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0873 5 10038497 10043346 Lal11g0891 11 11662660 11668151 LSH
Lal3g0744 3 6395883 6400128 Lal11g0891 11 11662660 11668151 LSH