Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0881 ATGGGGCGCATCCCATGTTGTGAGAAGGAAAACGTTAAAAGAGGACAATGGACAATAGAGGAAGACAATAAGCTATCTTCCTACATTGCTCAACATGGCACATGCAACTGGCGTCTCATCCCCAAAAATGCTGGGCTCCAAAGATGTGGAAAGAGCTGCAGACTGAGGTGGACCAACTACCTTCGTCCTGATCTTAAACATAGCCAATTCTCAGATTCAGAGGAACAAACCATTGTGAAACTTCATTCTGTTTTTGGTAACAGATGGTCACTAATAGCAGCTCAGCTATCAGGACGCACGGACAACGATGTCAAAAATCATTGGAACACAAAGCTGAGAAAGAAACTATCAGGCATGGGTATTGACCCTGTGACCCACAAGTCATTCTCTCATCTCATGGCTGAAATTGCTACAACACTGGCACCCCCACAGGCAGCTCATCTAGCTGAAGCAGCCCTTGGCTGCTTCAAAGATGAGGTGCTCCACCTTCTTACCAAGAAGCCGATTAACTTCCGGTGCCAACAATCCACTGCGGAATTGGGGAATGACACCAACAATTATATTAACTATAACCAGGAAGAAATCGACCGAACTTCTGACAATATTAAGCTCAGATTTTCAAAGGATGCCGAAGAGGAACCTGAAATGATACCCTCAAATAAATCTTGGAACTCCACTGCAGCTACATCTGCAAGTTTTGCAATGCAGTACAGTGTTTTCCCTACAATGTCTACGTTTCAGTACAGCCCAGCATCTATGTGCAATAAAGAGGATGATGCATCACCATGGAGCCAAAGTGTATGTACTGGAAGCACATTCACATCCATGGATCATCAAAACGAAAAACTTGAAGAAAATGTGGATGATTCTGAGGCTACAAAAGAAATAAGAAATCTATCCAATATATTCAACCCATACTATGTCTTGTGGGATTTACCAGCAGATGATTTAAATAACCCTATGATTACAGAACAGAGGAAGGCAAGATGCTCAACTTTTGGTTACTGGCATGAAGAATAA 1020 0.4265 MGRIPCCEKENVKRGQWTIEEDNKLSSYIAQHGTCNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHSQFSDSEEQTIVKLHSVFGNRWSLIAAQLSGRTDNDVKNHWNTKLRKKLSGMGIDPVTHKSFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPINFRCQQSTAELGNDTNNYINYNQEEIDRTSDNIKLRFSKDAEEEPEMIPSNKSWNSTAATSASFAMQYSVFPTMSTFQYSPASMCNKEDDASPWSQSVCTGSTFTSMDHQNEKLEENVDDSEATKEIRNLSNIFNPYYVLWDLPADDLNNPMITEQRKARCSTFGYWHEE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0881 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal11g0881 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal11g0881 339 CDD SANT 70 112 IPR001005 -
Lal11g0881 339 CDD SANT 17 61 IPR001005 -
Lal11g0881 339 Gene3D - 6 67 - -
Lal11g0881 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lal11g0881 339 PANTHER TRANSCRIPTION FACTOR MYB80 1 321 - -
Lal11g0881 339 Coils Coil 273 293 - -
Lal11g0881 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lal11g0881 339 PANTHER F14D16.11-RELATED 1 321 - -
Lal11g0881 339 Gene3D - 68 130 - -
Lal11g0881 339 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Lal11g0881 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal11g0881 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal11g0881 339 SMART sant 66 114 IPR001005 -
Lal11g0881 339 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0881 Lal-Chr11 11494140 11496384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0881 1 171 MYB Transcription Factor Family AT5G56110 86.550 3.92e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal11g0881 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0881 K09422 - gmx:100800764 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0881 11 11494140 11496384 Lal11g0881 11 11494140 11496384 ECH