Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0872 ATGAGCGATTCTGCATACAGAGTAGAAACCACTTCACGCCTTGCTCAATGGAAAATCGAAAACTTGTCTTCTTGCACTTACCGCAAATCCGATCCTTTCAAAATCGGAAAATGGAATTGGCATTTGTCGTTGGAGAAGAACAGGGTTTTGTATGTTAAATTATACCCAGAAATATCAAATTTAACGAGAGACAATCCTCCAATTGCATCTTTCATCATTAGAGTGGTTAGTTCTGTTGGAGTTCGTAAGGCCCTCGCCCATCCAGAAATAAAGGACAAGCTACTAAAGAACAATGAGGACTTTGTTTGGGCAGTGGAGGTTCCACTAACTGGAAAATTCATTATTGAAGTTGAGTTCCTTGATTTGAAGACCACATCTCCGAACGGTGAAGAACCTTTTTCTATCTTTACTGACGGATTTACTCGGAAAAGATTGAATGAAACAGCCCTTGACGCTCTTGGTAGAATGCTAACAGAAGGTATCCACACAGACATCACCATCAATGCTTCTGATGGAAGCATAGGAGCCCATCGGGCTGTTCTTGCTGCCCGATCGCCGGTCTTTCGCAGCATGTTCTCACATAACCTTCAAGAGAAAGAGTTGTCTACCATATACATCTCAGACATGTCAATTGAAGCCTGCCAAGCTTTTCTCAATTATCTTTATGGTATCATCAATCATGAAGAATTTCTTATGCATAGGCTTGCCCTTCTACATGCAGCTGACAAGTATGACATATCTGACTTGAGAGAGGCATGCCATGAGAGTCTTCTGGAAGATATTGATTCAAAAAATGTACTTGAGAGGCTCCAAAATGCATCACTATATCGATTGTTGAAACTTAAGATGAGCTGTATCCGTTATCTCGTCAAATTTGGTAAAATATTTGAGATCCGGGATGATTTCAATACCTTCCTGCAAAGTGCAGACAGGGATCTGATTGCTGAAGTCTTTCATGAAGTTCTTGGTGCATGGAAAGGATTCTGA 987 0.4083 MSDSAYRVETTSRLAQWKIENLSSCTYRKSDPFKIGKWNWHLSLEKNRVLYVKLYPEISNLTRDNPPIASFIIRVVSSVGVRKALAHPEIKDKLLKNNEDFVWAVEVPLTGKFIIEVEFLDLKTTSPNGEEPFSIFTDGFTRKRLNETALDALGRMLTEGIHTDITINASDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTIYISDMSIEACQAFLNYLYGIINHEEFLMHRLALLHAADKYDISDLREACHESLLEDIDSKNVLERLQNASLYRLLKLKMSCIRYLVKFGKIFEIRDDFNTFLQSADRDLIAEVFHEVLGAWKGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0872 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Lal11g0872 328 CDD MATH 17 119 IPR002083 GO:0005515
Lal11g0872 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Lal11g0872 328 PANTHER OS08G0495500 PROTEIN-RELATED 1 328 IPR044714 -
Lal11g0872 328 PANTHER OS08G0495500 PROTEIN 1 328 - -
Lal11g0872 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Lal11g0872 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Lal11g0872 328 SUPERFAMILY POZ domain 145 259 IPR011333 -
Lal11g0872 328 Gene3D Potassium Channel Kv1.1; Chain A 141 291 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0872 Lal-Chr11 11207309 11210286 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal11g0872 BTB 3.9e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0872 K10523 - gmx:100790186 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0872 11 11207309 11210286 Lal11g0872 11 11207309 11210286 ECH
Lal11g0872 11 11207309 11210286 Lal22g0369 22 2376107 2380509 PCT
Lal11g0872 11 11207309 11210286 Lal6g0392 6 2471189 2475484 PCT