Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0696 ATGGAATTGGATCTCGGCAAGCTCTTCATTGGAGGAATATCTTGGGACACTGATGAGGAACGTCTTAAAGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGAGATCGCACAACTGGTCGTGCTCGTGGTTTCGGTTTTGTTGTCTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCGAAGAAAGCTGTTCCTAGGGATGATCAGCACACCATAAATAGACAGGCCGGTACTGCACCCGCAGCTGCTGGTACTGGACATACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACTATCACCGAAAGTGATTTTAAGAATTATTTCGATCAGTTTGGTACAATTACTGATGTTGTAGTAATGTATGATCACAATACTCAGAGGCCAAGAGGTTTTGGCTTCATCACATTTGATTCAGAAGGATCCGTGGATAAAGTTCTTTATAAAACTTTTCATGAACTCAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGACCCAACCGGAGTTCATTGATAGGATATAACTATGGTCTGAATAGAGGGGCCAGTAGCTTCCTAAACAGTTACGATCATGGTTATAGTATGAGTCCGTTAGGAGGATATGGAGTAAGGATGGGTGGTAGGTTTAATCCATTCACTAGTGGAAGAAGTGGGCTTTCTCCATTTGGCGCATATGGAATCGGAATGAACTTGGATTCAGGATTGAACCCAAGCTATAGAGGGACTTCTAATTATGGGAGCAATTTAGGATATGGCGGAATAGTTAGTCCTTTCTGCAATGGCAACTCATGCAGATATACCAGTCCTATAGGCTATAGTGGCGGTGATGGTAGAAGCGATTCCCTTATGAGCTCATCTCCTCGGAATGTGTGGGGGAATGGGGGCTTGAATAATGCCTATAATGTAGCTGGTCCCAGTGCTTTAATGGGATCTGGAAGTGGGAATTTTGGTGTTTCATTTGGAAATAATGGCACAAACTGGGGTCCATCTATTCCAGCCCAAGGTGGAAGGGCTGCTTCTGGCTATGCTACTGGGAGTAATGCCTATGAAGGTGGAAATAGTAGTTTCGGATTAAGTGGGGGAGGGTATGGAAGAAACAGAAGTACAGGTGTGATTCCATCGTCTATGTTTAATGCATCAACTGGTCGTTACGAAGAATCCTGTGGGGACTTATACCGCAGTGGCAGCGGTTCAGTTTACAATGATTCTACTTGGCGGTCTGCAACGTCTGAGATTGATGGTTCTGGCTCATATGGATATGGTCTTGGTAGTATAGCTTCAGATTACCCAGTAAAGAGCTCTGAGGGCTATATTGGAAACTACAATGTTACAAATAGACAATCTACTAAAGGGACGAAATTTGAAAGCACTAAAACTGATCGTTTTGTTAAAATAAAGGGACTAAATAGGGATCAAATTACTCACTTTTGCTTAAATAGAAGGACCAAAACTGCAATTAAGCCTAACCTTGTGATTAGTGTGAATAATGGTATGCTCGTGAATAAGGTACTAGTTAAGCTTAAGGGGAAGTGTTATTGCATGGATATAAGACTTGCAATGTTATATGACATTGAATGTTGGGCGATAAAATGTCAACTAGAGAATAGACTCCATGTAGTTGAGATGAGAATGTTGCATTGGATGAGTGGACACGCTAGACAAGATAGGATTAGAAATGAGTACATTAGGGAGAAAGTTGGAGTAGCTTCTATTGTACAAAAGATGTTGAACCTCATTATTCGCTATAATCTTTTCCTTTGGGAGTCCTATTTTGGAGAGGAAGAGAAAGAAGGGGATGACTTAGGAGAGGGATTCCCTTGTTTGGAATAG 1902 0.4185 MELDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHTINRQAGTAPAAAGTGHTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEGSVDKVLYKTFHELNGKMVEVKRAVPKELSPGPNRSSLIGYNYGLNRGASSFLNSYDHGYSMSPLGGYGVRMGGRFNPFTSGRSGLSPFGAYGIGMNLDSGLNPSYRGTSNYGSNLGYGGIVSPFCNGNSCRYTSPIGYSGGDGRSDSLMSSSPRNVWGNGGLNNAYNVAGPSALMGSGSGNFGVSFGNNGTNWGPSIPAQGGRAASGYATGSNAYEGGNSSFGLSGGGYGRNRSTGVIPSSMFNASTGRYEESCGDLYRSGSGSVYNDSTWRSATSEIDGSGSYGYGLGSIASDYPVKSSEGYIGNYNVTNRQSTKGTKFESTKTDRFVKIKGLNRDQITHFCLNRRTKTAIKPNLVISVNNGMLVNKVLVKLKGKCYCMDIRLAMLYDIECWAIKCQLENRLHVVEMRMLHWMSGHARQDRIRNEYIREKVGVASIVQKMLNLIIRYNLFLWESYFGEEEKEGDDLGEGFPCLE 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0696 633 Gene3D - 103 189 IPR012677 -
Lal11g0696 633 Gene3D - 6 88 IPR012677 -
Lal11g0696 633 CDD RRM2_DAZAP1 105 183 IPR034131 GO:0003723
Lal11g0696 633 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 476 - -
Lal11g0696 633 SUPERFAMILY RNA-binding domain, RBD 106 193 IPR035979 GO:0003676
Lal11g0696 633 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal11g0696 633 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lal11g0696 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal11g0696 633 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Lal11g0696 633 SUPERFAMILY RNA-binding domain, RBD 5 92 IPR035979 GO:0003676
Lal11g0696 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lal11g0696 633 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lal11g0696 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lal11g0696 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0696 Lal-Chr11 6615069 6622924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0696 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 24.157 2.27e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0696 K14411 - gmx:100805131 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0696 11 6615069 6622924 Lal11g0696 11 6615069 6622924 ECH
Lal11g0696 11 6615069 6622924 Lal18g1601 18 17497829 17501717 PCT
Lal11g0696 11 6615069 6622924 Lal22g0060 22 366212 369838 PCT
Lal11g0696 11 6615069 6622924 Lal6g0049 6 308575 311123 PCT
Lal18g1601 18 17497829 17501717 Lal11g0696 11 6615069 6622924 PCT
Lal22g0060 22 366212 369838 Lal11g0696 11 6615069 6622924 PCT
Lal6g0049 6 308575 311123 Lal11g0696 11 6615069 6622924 PCT