Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0687 ATGGCGGCTTACGCAGTTAAACCTACTAAGCCCGGTTTTGAGGAACCACAAGACCAGATCCATAAGATTAGGATCACTCTTTCTTCCAAAAACGTCAAAAATCTCGAGAAGGTTTGTACGGACTTGGTTCGTGGTGGAAAAGATAAGCACCTAAAAGTTAAGGGACCTGTGAGGATGCCAACTAAAGTTCTAAACATCACTACAAGGAAAACCCCTTGTGGAGAAGGTACTAACACATGGGATAGATTCGAGCTGCGTGTGCACAAGAGAGTCATTGACCTCTACAGTTCTCCTGAAGTGGTGAAGCAAATTACCTCAATCACAATTGAACCTGGTGTGGAGGTTGAGGTGACCATTGCAGATGCTTAA 369 0.4417 MAAYAVKPTKPGFEEPQDQIHKIRITLSSKNVKNLEKVCTDLVRGGKDKHLKVKGPVRMPTKVLNITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPEVVKQITSITIEPGVEVEVTIADA 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0687 122 Hamap 30S ribosomal protein S10 [rpsJ]. 20 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lal11g0687 122 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lal11g0687 122 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lal11g0687 122 PRINTS Ribosomal protein S10 family signature 79 93 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lal11g0687 122 SUPERFAMILY Ribosomal protein S10 22 119 IPR036838 -
Lal11g0687 122 SMART Ribosomal_S10_2 24 118 IPR027486 -
Lal11g0687 122 Gene3D Ribosomal protein S10 domain 6 121 IPR036838 -
Lal11g0687 122 PANTHER RIBOSOMAL PROTEIN S10-RELATED 1 121 - -
Lal11g0687 122 Pfam Ribosomal protein S10p/S20e 24 118 IPR027486 -
Lal11g0687 122 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lal11g0687 122 TIGRFAM uS10_euk_arch: ribosomal protein uS10 21 119 IPR005729 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0687 Lal-Chr11 6343233 6345695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0687 1 122 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 86.066 2.60e-74 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0687 K02969 - pvy:116112228 226.483