Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0649 ATGCAGTGGGACAGCGATTCCGATCTCAGCGGTGACGAAGAAGATGCAGCGTCTTTCATCTTCAACCACGACGAAATTGATGTTGCTGGACCTCTTCCTTTTCCTTTTCCCCTCCAAACGGCGCCGTGTGGCTTTGTCGTAACCGATGCCATCGATCCCGATCATCCTATCATATACGTCAACACCGTCTTCGAGATGCTCACTGGCTACCGTGCCGAGGAAGTCCTCGGTCGCAATTGTCCTTCTCAGTTGGAGTTTGTCAATGCCATTTATAGTCCTTTAAGGGAGTGA 291 0.5052 MQWDSDSDLSGDEEDAASFIFNHDEIDVAGPLPFPFPLQTAPCGFVVTDAIDPDHPIIYVNTVFEMLTGYRAEEVLGRNCPSQLEFVNAIYSPLRE 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0649 96 CDD PAS 41 79 IPR000014 -
Lal11g0649 96 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 80 - -
Lal11g0649 96 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 82 IPR035965 -
Lal11g0649 96 ProSiteProfiles PAS repeat profile. 50 96 IPR000014 -
Lal11g0649 96 TIGRFAM sensory_box: PAS domain S-box protein 51 82 IPR000014 -
Lal11g0649 96 Pfam PAS domain 42 82 IPR000014 -
Lal11g0649 96 Gene3D PAS domain 33 92 - -
Lal11g0649 96 PANTHER ADAGIO PROTEIN 1-LIKE 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0649 Lal-Chr11 5547426 5548606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0649 38 80 AGC Kinase Gene Family AT3G45780 51.163 1.94e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0649 K12115 - gmx:100802828 121.709