Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0642 TATACCTTCACTCTTAACAAGGAAAATCTAACAACAAAGATAAAAAAAACCAAAGCCATGTCTTTTATTGGAACACAGCAAAAGTGTAAAGCTTGTGAGAAAACAGTTTATCCTGTTGATCAGTTATCTGCTGATGGCACTGCTTACCATAAAGCTTGCTTCAGATGCTCTCATTGCAAAGGAACATTAAAGCTGAGCAACTATTCTTCAATGGAAGGTGTTCTATACTGTAAGCCTCATTATGAGCAGCTTTTCAAGGAGACAGGCTCATTCAGCAAGAACTTCCAGTCATCTGCAAAGCTAGCTGATAAGACGACACCCGATCAGACAAGTTCCCCTACCAAAGCTGCTAGCATGTTTTCTGGAACACAAGAAAAGTGTGCTACATGTTGCAAAACCGCTTATCCATTGGAAAAGGTAACAGTGGAAGGGCAGGTCTATCATAAATCATGTTTCAAGTGTTCACACCGAGGCTGTGCTATAACGCCATCAAATTATGCAGCCCTTGATGGTATTTTGTATTGCAAGCACCATTTCTCCCAGATTTTTAAGGAGAAAGGAAGTTATAATCATCTCATTAAGACTGCATCAATCAAACTGGCAGCAGCCTCTGTTCAAGAATCTTAA 627 0.3987 YTFTLNKENLTTKIKKTKAMSFIGTQQKCKACEKTVYPVDQLSADGTAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFSKNFQSSAKLADKTTPDQTSSPTKAASMFSGTQEKCATCCKTAYPLEKVTVEGQVYHKSCFKCSHRGCAITPSNYAALDGILYCKHHFSQIFKEKGSYNHLIKTASIKLAAASVQES 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0642 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 55 95 - -
Lal11g0642 208 SMART lim_4 28 80 IPR001781 -
Lal11g0642 208 SMART lim_4 126 178 IPR001781 -
Lal11g0642 208 Pfam LIM domain 29 84 IPR001781 -
Lal11g0642 208 Pfam LIM domain 127 181 IPR001781 -
Lal11g0642 208 ProSiteProfiles LIM domain profile. 125 185 IPR001781 -
Lal11g0642 208 ProSiteProfiles LIM domain profile. 27 87 IPR001781 -
Lal11g0642 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 153 192 - -
Lal11g0642 208 Gene3D Cysteine Rich Protein 121 191 - -
Lal11g0642 208 Gene3D Cysteine Rich Protein 23 93 - -
Lal11g0642 208 PANTHER OS06G0237300 PROTEIN 20 208 IPR045268 GO:0051015
Lal11g0642 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 119 152 - -
Lal11g0642 208 CDD LIM1_SF3 25 87 - -
Lal11g0642 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 54 - -
Lal11g0642 208 ProSitePatterns LIM zinc-binding domain signature. 29 63 IPR001781 -
Lal11g0642 208 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 20 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0642 Lal-Chr11 5455044 5458220 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal11g0642 LIM 1.2e-08 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0642 K09377 - gmx:100809121 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0642 11 5455044 5458220 Lal11g0642 11 5455044 5458220 ECH