Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0621 ATGTCTTCAGGGACATCTTCGTATTGGTGTTATAGGTGCAGCCGTTTAGTGAGGGTATTAGTGCAGGACATGGTTGTGTGTCCCAATTGTGATAGCGGTTTTCTCGAGGAGATTGAGCATCCGGCGCGTGCTATTCACGTGGAAGATGGCCGTCAGCGGTTCCCGGCGGCAGAGATGAACATGGTTGGTCAGCGCCCAAATTTTGATCAGAATACCCGCCCCCGTTTTCGTCGAAGCGGCCGCATCAGTGGTGACCGGTCACCGTTCAATCCGGTCATCATCCTGCGCGGCAGCCGTGGTTCCGTGGCGCAGGATGACCGGGAGGGTCGTGGGTTTGAGCTTTTGTATGATGATGGTGCAGGTTCTGGTCTTAGGCCTTTGCCTCCTAGCATGTCTGAGTTTCTTCTTGGATCTGGGTTTGATAGGATATTGGAACAGCTTTCTCCAATTGAAATCAATGGTATTGGAAGGTCTGAACAACCTCCTGCTTCAAAAGCTGCAATTGATTCATTGCCAACAATTGAGATTGGTAAGGGTCATTTAGAATTGGAATCACATTGTGCTGTTTGTATGGATCCTTTTCAATTATGCACTTCAGTTAGGGAAATGCCTTGTAAGCATATATATCATGAAGAATGCATTATTCCATGGCTTGCACTTCATAATTCATGTCCTGTTTGTCGTCACGAATTGCCTGATGATACTATCCCCAATCAGAGTACACCTTTAATGGGGAATTCGACGAATTCTGTTGCTATGAATGAAGCTGAGAATGTAGGGTTGACTATTTGGAGATTACCGGGTGGAGGGTTTGCTGTAGGGAGGTTATCTGGTGGGAGAAGAGGTGCTGAGAGAGAGCTTCCGGTTGTTTATACGGAAATGGATGGTGGTTTTAACAACGGTGGCGAGCCTAGGAGGATTTCTTGGTCATCTAGAGGGACTAGAGGAGGAAGAGAGAGTGGTGGTTTGCGTAGGTTTTTCGAGAATATGTTTGGTTGTCTCAGAGGCGGTGGAGTTGGAACTCGGCAACCTATTTCGAGAACAACATCTCCATCCATCACAAGGGCAAGTTCGTCGCACTCCAATGTGAATCCCTCTGCACGTTCTCGCAGAACTTGGTCTATGGATGTGAACAGTGGACTAAGACCGCTGGGTCGCGAAGCTTATTCAGGAGATGTTTTTTATTTGCACTCACGTCTTTTGGAAAGAGCCGCTAAATCAAGTTCTCAATTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACATAG 1275 0.4706 MSSGTSSYWCYRCSRLVRVLVQDMVVCPNCDSGFLEEIEHPARAIHVEDGRQRFPAAEMNMVGQRPNFDQNTRPRFRRSGRISGDRSPFNPVIILRGSRGSVAQDDREGRGFELLYDDGAGSGLRPLPPSMSEFLLGSGFDRILEQLSPIEINGIGRSEQPPASKAAIDSLPTIEIGKGHLELESHCAVCMDPFQLCTSVREMPCKHIYHEECIIPWLALHNSCPVCRHELPDDTIPNQSTPLMGNSTNSVAMNEAENVGLTIWRLPGGGFAVGRLSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGTRGGRESGGLRRFFENMFGCLRGGGVGTRQPISRTTSPSITRASSSHSNVNPSARSRRTWSMDVNSGLRPLGREAYSGDVFYLHSRLLERAAKSSSQLGEGSMTALPIVET 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0621 424 MobiDBLite consensus disorder prediction 302 321 - -
Lal11g0621 424 CDD RING-H2_RNF126_like 187 228 - -
Lal11g0621 424 Gene3D - 377 424 - -
Lal11g0621 424 MobiDBLite consensus disorder prediction 342 370 - -
Lal11g0621 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Lal11g0621 424 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Lal11g0621 424 Pfam Ring finger domain 186 228 IPR001841 -
Lal11g0621 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 424 IPR027417 -
Lal11g0621 424 SUPERFAMILY RING/U-box 167 234 - -
Lal11g0621 424 Pfam Protein of unknown function (DUF1117) 259 361 IPR010543 -
Lal11g0621 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 332 - -
Lal11g0621 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 332 - -
Lal11g0621 424 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Lal11g0621 424 MobiDBLite consensus disorder prediction 338 370 - -
Lal11g0621 424 SMART ring_2 187 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0621 Lal-Chr11 5204776 5206629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0621 114 236 C3H Transcription Factor Family AT5G15820 39.098 7.26e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0621 - K11982 gmx:100807324 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0543 3 4044815 4045978 Lal11g0621 11 5204776 5206629 ECH
Lal9g1598 9 18344011 18346264 Lal11g0621 11 5204776 5206629 ECH
Lal11g0621 11 5204776 5206629 Lal11g0621 11 5204776 5206629 ECH