Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0575 ATGTCGTATGTGCCACCACACATGAGAAACACGAGCTCAACCACCGTCGATAACAACACCAAGCTCGCATTTCCTTCCTTTAACTCAAACTCTTACTCACATAATAACAACTCTCTCTACAATGCTTCTCGCCGTACCTCCGCCGCTCCTCCACCGTCTCGTATTCTCTCCGCCCCTGACCCTGTCTTCCCTCCATGGCAACCCTCCCAACGCGTTTCCCGCATGAACCCTCACCAGATTGAAGAGGTCTGCCTGCGGCTTAATCTTGATGTTACCGTTGCATCTGACTCTCCTGCTGCACCTACACCAATAGAATCGTTTACTGACATGTGTTTGGACCCAAGTATCATGAAGGATATTGCATATCACGACTACACTAGGCCTACTTCTATCCAAGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGTGGGAAAACTGCAGCTTTCACGATTCCTATGATACAGCACTGTGTGGCTCAAACTCCAATTCGGCGTGGCGACGGTCCTCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTATTGAGTCATTAAAAACTGCTATAGTTGTGGGTGGATCTAACATTGAAAAGCAGAGGTCAGAGCTAAAAGCGGGAGTTGAAGTAGTGGTTGCCACCCCGGGAAGATTTATTGATCACTTACAACAAGGCAACACTTCCCTTTCTAGAGTTTCTTTTTTTGTTTTAGACGAGGCAGATAGAATGCTTGATATGGGTTTCGAACCACAGATAAGAGAGGTAATGAGAAATCTTCCAGATAAGCATCAAACACTATTGTTTAGTGCAACTATGCCTGTGGAGATTGAAGTATTAGCAAAGGAGTACTTAAGTAGCCCTGTGCATGTGAAGGTGGGAAAAGTGAGTAGCCCGACAACAAACGTTTTACAGAACCTTGTTAAGGTTTCTGAAAATGAGAAGATTGATCGGCTTCTAGATTTGCTCGTTGAAGAGGCATCACAGGCTGAAAAGAGTGGTCACCCATTTCCATTAACAATTGTGTTTGTTGAAAGAAAGACAAGGTGTGACGAAGTTACTGAAGCATTGATAGCCCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGTAGTCAGGGTGAAAGAGAGAGTGCCCTGCATTATTTTCGGAGTAGCTCCACCAACATTTTGGTTGCCACTGATGTAGCATCTCGCGGATTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCAGGATCAACAGGCCTATCTACTTCCTTTTACACAGATCGCGACATGTTTCTTGTAGCAAATATAAGAAAAGCAATAGCTGATGCTGAATCCGGGAACACTCTGTCATTTGCAACTGGAAAGTTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCAGCACAAAAAGAGGCAAATATTGCTTTATCCAAAAACTCGGGAATCGGGACTGCTTCAGTTAACATCGAAGATAAGTATAAATTCATGATGTCTGCCTCAAACAATAAAGGAGAGGGCACCGCGGATAGTGCATGGGATGATTGA 1653 0.4471 MSYVPPHMRNTSSTTVDNNTKLAFPSFNSNSYSHNNNSLYNASRRTSAAPPPSRILSAPDPVFPPWQPSQRVSRMNPHQIEEVCLRLNLDVTVASDSPAAPTPIESFTDMCLDPSIMKDIAYHDYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSIESLKTAIVVGGSNIEKQRSELKAGVEVVVATPGRFIDHLQQGNTSLSRVSFFVLDEADRMLDMGFEPQIREVMRNLPDKHQTLLFSATMPVEIEVLAKEYLSSPVHVKVGKVSSPTTNVLQNLVKVSENEKIDRLLDLLVEEASQAEKSGHPFPLTIVFVERKTRCDEVTEALIAQGLSAVSLHGGRSQGERESALHYFRSSSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLSTSFYTDRDMFLVANIRKAIADAESGNTLSFATGKFARRKEKEAAAAQKEANIALSKNSGIGTASVNIEDKYKFMMSASNNKGEGTADSAWDD 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0575 550 MobiDBLite consensus disorder prediction 38 60 - -
Lal11g0575 550 SMART helicmild6 372 453 IPR001650 -
Lal11g0575 550 Pfam DEAD/DEAH box helicase 129 297 IPR011545 GO:0003676|GO:0005524
Lal11g0575 550 CDD SF2_C_DEAD 324 462 - -
Lal11g0575 550 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 258 266 IPR000629 -
Lal11g0575 550 Coils Coil 191 211 - -
Lal11g0575 550 Pfam Helicase conserved C-terminal domain 336 453 IPR001650 -
Lal11g0575 550 Coils Coil 334 354 - -
Lal11g0575 550 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 105 133 IPR014014 GO:0003724
Lal11g0575 550 CDD DEADc 116 313 - -
Lal11g0575 550 SMART ultradead3 124 327 IPR014001 -
Lal11g0575 550 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 11 515 - -
Lal11g0575 550 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 494 IPR001650 -
Lal11g0575 550 Coils Coil 494 514 - -
Lal11g0575 550 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 312 IPR014001 -
Lal11g0575 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 473 IPR027417 -
Lal11g0575 550 Gene3D - 67 316 IPR027417 -
Lal11g0575 550 Gene3D - 318 511 IPR027417 -
Lal11g0575 550 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 11 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0575 Lal-Chr11 4635276 4646745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0575 105 475 Eukaryotic Initiation Factors Gene Family AT1G72730 35.200 1.27e-68 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0575 K12823 - gmx:100818387 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0575 11 4635276 4646745 Lal11g0575 11 4635276 4646745 ECH