Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0560 ATGTCTGGTTCTGTAGGAGAAAGTGGCCATGATAAGAAGAAGAGGTTTGCCCTACTCGGCGTCTCTTCGATCCTTCTTGTTGCTATGGTTGGCGCGGTGGCCATTGGTTTAACCCGAAGTGGAAGCTCGGATCACGGTTCTACCGAGATCTCGAGCTCTCAGAAGAATGCAGAGGTGCTCTGCCAATCCACACAATACAAAGATACTTGCATCAAAAGCCTCGATAAGGCATCGAACACGACCGATGTCAAAGAGCTTGTGAAAATGGCCTTTAATTCCACAGCTGAGGAGTTGTTAAGCAAAATTAACAACTCCGAACTTTTGAAAGAGTTGTCTAAGGATAACATGACAAAACAGGCTTTGGATATATGCAAGGAAGTGTTTGATTATGCAATTGATGACATTCAGAAATCAATTAACTCATTGGACAATTTTGAAGTCAGCAAACTAAGCCAATATGCCTATGACCTTAAGGTTTGGCTTGCAGGCACACTCTCACACCAACAAACATGTTTGGATGGATTCGAGAACTCGAAAACAAAAGGCGGCGAGACAATGAAAAAGGCCTTAAACACATCAATAGAGCTAAGTAGCAATGCAGTTGATCTCATCAATGCTGCATCTGTACTACTCAAGGGTTTCAACTTGAACTCGTCCGAGCTTAGCACAATTGCTAGCAGGAGGCTTCTCTCCGATGAAGAACAACAACAACAACAACAGCAACAACAACAACAAGAGGAACCACTTGTTGATGGTTTTCCTTCATGGGTGAGTGATGGACAAAGGAGTCTTCTTCAGGCTAAACCTGGTGGTGGTGGCGGCATTAAGGCTAACGCGGTCGTGGCTCAAGATGGGAGTGAACAGTTCAAAACACTCACTGATGCTCTCAACACTGTTCCTAAGAAGAATGCTTTGCCCTTTGTGATTCATGTGAAGGAGGGTGTATACAAGGAGTATGTTTCTTTGCTCAAGCATATGACCAATGTCACAATCATTGGAGATGGTCCTACAAAGACCATTTTCTCTGGCAGCAAAAATTACAAGGATGGTGTCCAAACTTATAACACTGCAACATTTGGTGTTAATGCTGCTAACTTCATTGCCAAGGATATCGGGTTCGAGAACACAGCAGGATCAGAGAAGCACCAAGCTGTGGCACTCAGGGTAACAGCAGACCAAGCAGTGTTCCACAACTGCAAAATGGATGGATTCCAAGACACACTCTACGTCCAATCGAAGCGCCAATTCTACCGCGACTGCACCATCTCAGGCACAATCGATTTCATATTCGGCGACGGGATCGCAGTGTTCCAAAACTGCAAACTAGTTGTAAGAAAGCCCTTAGACAACCAACAATGTATGGTTACAGCAGGTGGAAGGTCCAAGCTAGAAAGCCCTAGTGGCCTAATATTCCAAAACTGTCACTTCACAAGTGAGCCAGAAATAGCTACCTTGAACCCCAAGATATCATATTTGGGAAGGCCATGGAGAATTTACTCTAGAGTAGTAATCATGGATTCTACAATTGATGACATTTTTGTGCCACAAGGTTATATGCCATGGATGGGAAGTGCATTCACTGATACATGTACATATTATGAGTACAATAACAAAGGTGGTGGTGGTAACACTGCATCAAGAGTAAAATGGCCTGGTGTTAAGGCCATAACAGCTTCTGAAGCTTCTGTTTTCTATCCAGGGAAATTCTTTGAGATTGCTAACTCAACTCAACGTGATTCTTGGATTATTAGCTCTGGTGTACCATATTCACTAGGCCCTATTCCGACCGGAGGGTCCAGTACTCGGTAG 1809 0.4389 MSGSVGESGHDKKKRFALLGVSSILLVAMVGAVAIGLTRSGSSDHGSTEISSSQKNAEVLCQSTQYKDTCIKSLDKASNTTDVKELVKMAFNSTAEELLSKINNSELLKELSKDNMTKQALDICKEVFDYAIDDIQKSINSLDNFEVSKLSQYAYDLKVWLAGTLSHQQTCLDGFENSKTKGGETMKKALNTSIELSSNAVDLINAASVLLKGFNLNSSELSTIASRRLLSDEEQQQQQQQQQQQEEPLVDGFPSWVSDGQRSLLQAKPGGGGGIKANAVVAQDGSEQFKTLTDALNTVPKKNALPFVIHVKEGVYKEYVSLLKHMTNVTIIGDGPTKTIFSGSKNYKDGVQTYNTATFGVNAANFIAKDIGFENTAGSEKHQAVALRVTADQAVFHNCKMDGFQDTLYVQSKRQFYRDCTISGTIDFIFGDGIAVFQNCKLVVRKPLDNQQCMVTAGGRSKLESPSGLIFQNCHFTSEPEIATLNPKISYLGRPWRIYSRVVIMDSTIDDIFVPQGYMPWMGSAFTDTCTYYEYNNKGGGGNTASRVKWPGVKAITASEASVFYPGKFFEIANSTQRDSWIISSGVPYSLGPIPTGGSSTR 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0560 602 PANTHER PECTINESTERASE 8 596 - -
Lal11g0560 602 Pfam Pectinesterase 278 570 IPR000070 GO:0030599|GO:0042545
Lal11g0560 602 Pfam Plant invertase/pectin methylesterase inhibitor 60 202 IPR006501 GO:0004857
Lal11g0560 602 Gene3D - 275 593 IPR012334 -
Lal11g0560 602 MobiDBLite consensus disorder prediction 230 249 - -
Lal11g0560 602 CDD PMEI-like_3 60 208 - -
Lal11g0560 602 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 206 IPR035513 -
Lal11g0560 602 Coils Coil 227 247 - -
Lal11g0560 602 SMART PMEI_2 52 203 IPR006501 GO:0004857
Lal11g0560 602 ProSitePatterns Pectinesterase signature 1. 303 322 IPR018040 -
Lal11g0560 602 SUPERFAMILY Pectin lyase-like 275 590 IPR011050 -
Lal11g0560 602 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 205 IPR006501 GO:0004857
Lal11g0560 602 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Lal11g0560 602 PANTHER PECTINESTERASE 8 596 - -
Lal11g0560 602 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 207 IPR035513 -
Lal11g0560 602 MobiDBLite consensus disorder prediction 230 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0560 Lal-Chr11 4543678 4545987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0560 5 589 Carbohydrate Esterase AT5G49180 46.644 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0560 K01051 - gmx:100820068 771.155