Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0548 ATGGATCAAGGTAGAATTAAACATGAGGGTGAGGTATTGGATCATGTTCATGAAGGGGGTCATGAGAATTCAAGTGTTTTGGTTGATGGGGCTGTGATTCACGTAGTAGATGGGGTCAGTTTGGGTGGAAAAGTTAGTATAAGTGGAGAACCTGGGAGTTCAAAAGAGACTGGTAACGATTCGGGTTTGAATAAAGAGATAAATGAAGTTAAGGGTCCTAATAAAGAAAAAATCATCGATACATTGACTGTGGTTGATGAAGGGACAAGTAATAGTTCAAACCATTTGGTTAATGAGGAAGTCCTTGAGACTGTTCAGAATGAGCATGTAAATGGAGATAATAGGAAATTGGAAGCAAAAGTTACTGAATCAGGGTTGAGAGAAGTAGACCTGAAAGACCTGAAAGGGGTGCCTGAAACAGATAAGAATTCATCTGTGGTTGATATAAAGCGTAGCAGCTGCAAAGGATTAAGTATCAGTTCAGATGGTGAAAGGGTTTGTAGGATTTGCTATCTTGCTTCCGGGCGACTATCAAATGCATCGGCTGTTGGCATTGATGGCAGTACTACTAGTAGAGCAGATTTGATTCATCTTGGTTGTGCATGCAAAGATGATCTAGGCATTGCACACATTCATTGCGCTGAGGCATGGTTCAGGCTTAGAGGAAACAGAGTATGTGAAATATGCGGCGAAACTGCAAAAAACGTTTCAGGCATTGCGGATCGCAGATCAATGGCAGAGTGGAACGAAAGAGGACACATGGACGAAGAAAGCAACTCATCCAGGCAGGGCTTGTCTCTATGCCCTTAA 810 0.4222 MDQGRIKHEGEVLDHVHEGGHENSSVLVDGAVIHVVDGVSLGGKVSISGEPGSSKETGNDSGLNKEINEVKGPNKEKIIDTLTVVDEGTSNSSNHLVNEEVLETVQNEHVNGDNRKLEAKVTESGLREVDLKDLKGVPETDKNSSVVDIKRSSCKGLSISSDGERVCRICYLASGRLSNASAVGIDGSTTSRADLIHLGCACKDDLGIAHIHCAEAWFRLRGNRVCEICGETAKNVSGIADRRSMAEWNERGHMDEESNSSRQGLSLCP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0548 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 240 IPR013083 -
Lal11g0548 269 ProSiteProfiles Zinc finger RING-CH-type profile. 159 236 IPR011016 GO:0008270
Lal11g0548 269 MobiDBLite consensus disorder prediction 250 269 - -
Lal11g0548 269 SUPERFAMILY RING/U-box 162 232 - -
Lal11g0548 269 PANTHER ZINC FINGER, RING-CH-TYPE 1 263 - -
Lal11g0548 269 MobiDBLite consensus disorder prediction 43 69 - -
Lal11g0548 269 Pfam RING-variant domain 189 229 IPR011016 GO:0008270
Lal11g0548 269 MobiDBLite consensus disorder prediction 50 64 - -
Lal11g0548 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 263 - -
Lal11g0548 269 SMART ringv_2 166 230 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0548 Lal-Chr11 4401943 4404323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0548 161 250 C3H Transcription Factor Family AT5G05830 41.111 5.11e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0548 - - gmx:102668208 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0548 11 4401943 4404323 Lal11g0548 11 4401943 4404323 ECH
Lal3g0411 3 2853690 2856510 Lal11g0548 11 4401943 4404323 LSH
Lal7g0689 7 13885202 13888808 Lal11g0548 11 4401943 4404323 PCT
Lal11g0548 11 4401943 4404323 Lal7g0689 7 13885202 13888808 PCT