Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0541 ATGGCTGATAATTCATCACGCAATGGAAATCACCATGACGCAGTGGTTGTAAATGTGCATGATGATGTAGCCATCGATGTTTCTGTCCCTATTTGGCAGAAGTTGTTAGCAGAGGTATTGGGCACGTACTTTATGATGTTTGCAGGGTGTGGTGCTGTGGTGGTGAACCTTGATAACGAGAAAGTGGTGACACATCCAGGGATTTCAATTGCTTGGGGACTTGTTGTGATGGTTTTGGTCTACACTCTTGGCCATATTTCTGGTGCTCATTTCAACCCTGCTGTTACCATTGCTCATGCTTCCATCAAAAGGTTTCCTTTGAAGGAGGTACCACTATATATTGTAGCTCAGGTTATTGGATCATTACTTGCAAGTGGAACTCTTAGACTCGTATTTAATGGTAAAGAAAACCAGTTTATAGGAACAATTCCTTCTGGCTCTGATTTGCAAGCTGTTGTGATTGAATTCATAATCACTTTCTACCTCATGTTTGTCGTTTCTGGAGTTGCCACTGATAATAGAGCGGTAGGCTTCAACTATCAGGGAGTTCCATTGTTATTGGGGTATGGGAAGAGTGGAGAATCACAAATTGGTGAGTTGGCTGGACTTGCAGTTGGGTCAACAGTATGTCTAAATGTATTGTTTGCTGGGCCAATAACTGGAGCATCAATGAACCCAGCAAGAAGTTTAGGTCCTGCTATTATGTACAATGAATACAAAAGCATATGGGTGTACATGGTGTCTCCAATTTTGGGAGCTGTGTCTGGTACATGGGTCTACCATTTCATTAGGTACACTAACAAGCCTTTGCGTGAGATCACACACAGTGCCTCTTTCCTCAAAGGAAAAAATGGAGCCAAATGA 864 0.4236 MADNSSRNGNHHDAVVVNVHDDVAIDVSVPIWQKLLAEVLGTYFMMFAGCGAVVVNLDNEKVVTHPGISIAWGLVVMVLVYTLGHISGAHFNPAVTIAHASIKRFPLKEVPLYIVAQVIGSLLASGTLRLVFNGKENQFIGTIPSGSDLQAVVIEFIITFYLMFVVSGVATDNRAVGFNYQGVPLLLGYGKSGESQIGELAGLAVGSTVCLNVLFAGPITGASMNPARSLGPAIMYNEYKSIWVYMVSPILGAVSGTWVYHFIRYTNKPLREITHSASFLKGKNGAK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0541 287 PANTHER AQUAPORIN NIP2-1 18 283 IPR034294 -
Lal11g0541 287 PANTHER AQUAPORIN NIP1-1-RELATED 18 283 - -
Lal11g0541 287 SUPERFAMILY Aquaporin-like 29 273 IPR023271 -
Lal11g0541 287 Pfam Major intrinsic protein 28 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g0541 287 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Lal11g0541 287 CDD MIP 33 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g0541 287 Gene3D Glycerol uptake facilitator protein. 10 274 IPR023271 -
Lal11g0541 287 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g0541 287 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g0541 287 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g0541 287 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g0541 287 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g0541 287 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0541 Lal-Chr11 4328348 4333484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0541 29 281 Major Intrinsic Protein MIP AT5G37820 57.312 1.42e-97 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0541 K09874 - gmx:100786924 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0541 11 4328348 4333484 Lal11g0541 11 4328348 4333484 ECH
Lal3g0390 3 2672486 2675381 Lal11g0541 11 4328348 4333484 LSH