Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0522 ATGTCTACATCACGACCGTTCGATATGATAATGGATTTGAATGACTCCAAATACCTGTGGAAGATTGCAGTCAGAATAACTGACATTTGGTATGTGCAACTACCTCCCAAACCCGGACATCTGGAAATGATATTAATGGATTCTAAGGGGGACAGAATTCAAGTCTCTGTCCGAAAGGATCAGTTTAACGAATGGAGAGAACATTTGGTTGAGAGTTCAACTTATGTCATGCACAATTTTAATGTCATGCACAATGACATCCAATTTAAGGCATGTGACCATGTTTACAGAATGCAATTCACTGCCGGTACCACTCTCAAACAAAGAGAATTTCCTGATATTCCTGAATGGGAATATGATTTCAAAAAGTTTGGTGACATCCTTGACGGAAACGGTAGAAATAATTTACTAATAGATATCATTGGTGCTTTTGATAAGGTAATATTCTCCCAAACACAAGGCAATTTGAAGAAAGTTGTCTTCAGTTTGAAAGATTTTAGTGGTGATTTCATTAACTGTACTATGTGGGAATCACATGCTACCAAATTCGAGAAACACTATAACAACCACTGTAATGTTGAACCTATGATAATTTTGTTAACTCATGCTAGAATCAAAGAAGGACAAGGTAAGTATCCACATAGCATTTCCAACTCATGGTGCGGATCAAAAATATTGATTGGTGAAGAAATTCCCAACATTGACAAGTACAAACAAAGTCTATCATGTGATACATTGAGCCATAGTAACAGCCAAATGTCACAATATTCTAACTTATCTGATGATGAGCGATTTATGTATAAAGCTGAAGTCAAGAGTATTACAGAAATTTCTGCAATTACATCTTCTGAGGAAATAACCTGTGTAACAGTTGGGACGACAGCAATGTTTGTTGTTGGCAAACACGGATGGTACTATGAAGGTTGTACTAAATGTACAAAGAAGACTGATGTTAAAGATGGCCCATTCACATGCAAGTGTGGCACATACAATCAGAAGTCTTCACCAAGGCAATTTGATTATTATTTTGACTCCAATATAATGTCTCTTTCACACCCCTTCGATATGATCACTGATGTGAATGATTCCAAACATTTTTGGAAAATAGCTGTTCGAATAACAAAACTTTGGTTTGTTCAAAAACCACCCAAATCTGGACATTTAGAGATGGTTTTGATGGATTCAAAGGGGCACAAAATTCAAGTCTCCGTTGTAAAGGAAGATTTTATTCGATGGCGTAATTATTTAGTGGAGTATGATACTTATATGATGCAAAACTTTGATGTGATGCTAAATGACTGTGAATTTAAAGCATGCGACCATCTTTATCGGATGGAGTTCAATGCCAATACAATAGTTGAACGACTTATATGTCCTGCTATTCCTCTTTTTGAATACGAATTCAAAAAATTTGCTGAAATTGTAGCTGGCCAGTTTTCAAGTGATTGTCCAACAATAGTTTCAAGTTCATGGTGTGGATCAAAGTTATTGATTGGGGAAGAAATAAATGACATTGCAAAGTATAAGCAAAGGTTTTCTTCTTTGCCTCTATGGTTTGACCAATTCAGTGAAGGACAATGCCAGTTACCATCACCTCAAGCTGTGTCTTTTACTGCTGAACATGATCCAGACCACCTTGAAGTCATAACTTCTTCCAAGAGAATGTGGGGTGAGTTAGATTTGGATTTGGCTCAAAGCCCTTTACAATCTTCCTCTGGAATTTCATCTTCCAATGTTGCAAAGCATATGAAGACTAAATAA 1761 0.3646 MSTSRPFDMIMDLNDSKYLWKIAVRITDIWYVQLPPKPGHLEMILMDSKGDRIQVSVRKDQFNEWREHLVESSTYVMHNFNVMHNDIQFKACDHVYRMQFTAGTTLKQREFPDIPEWEYDFKKFGDILDGNGRNNLLIDIIGAFDKVIFSQTQGNLKKVVFSLKDFSGDFINCTMWESHATKFEKHYNNHCNVEPMIILLTHARIKEGQGKYPHSISNSWCGSKILIGEEIPNIDKYKQSLSCDTLSHSNSQMSQYSNLSDDERFMYKAEVKSITEISAITSSEEITCVTVGTTAMFVVGKHGWYYEGCTKCTKKTDVKDGPFTCKCGTYNQKSSPRQFDYYFDSNIMSLSHPFDMITDVNDSKHFWKIAVRITKLWFVQKPPKSGHLEMVLMDSKGHKIQVSVVKEDFIRWRNYLVEYDTYMMQNFDVMLNDCEFKACDHLYRMEFNANTIVERLICPAIPLFEYEFKKFAEIVAGQFSSDCPTIVSSSWCGSKLLIGEEINDIAKYKQRFSSLPLWFDQFSEGQCQLPSPQAVSFTAEHDPDHLEVITSSKRMWGELDLDLAQSPLQSSSGISSSNVAKHMKTK 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0522 586 Gene3D - 112 256 IPR012340 -
Lal11g0522 586 Pfam Domain of unknown function DUF223 389 477 IPR003871 -
Lal11g0522 586 Pfam Domain of unknown function DUF223 42 136 IPR003871 -
Lal11g0522 586 CDD RPA1_DBD_A_like 368 453 - -
Lal11g0522 586 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 39 333 - -
Lal11g0522 586 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 394 486 - -
Lal11g0522 586 PANTHER REPLICATION FACTOR A 1, RFA1 394 486 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal11g0522 586 PANTHER REPLICATION FACTOR A 1, RFA1 39 333 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal11g0522 586 CDD RPA1_DBD_B_like 157 241 - -
Lal11g0522 586 CDD RPA1_DBD_A_like 21 105 - -
Lal11g0522 586 SUPERFAMILY Nucleic acid-binding proteins 353 455 IPR012340 -
Lal11g0522 586 SUPERFAMILY Nucleic acid-binding proteins 6 108 IPR012340 -
Lal11g0522 586 SUPERFAMILY Nucleic acid-binding proteins 119 246 IPR012340 -
Lal11g0522 586 Gene3D - 5 108 IPR012340 -
Lal11g0522 586 Gene3D - 353 455 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0522 Lal-Chr11 4194621 4201001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0522 10 327 Core DNA Replication Machinery Family AT5G45400 25.148 1.77e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0522 - - lang:109343677 508.834