Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0501 ATGAAGCCTACATACATAGTCAATGAATCTAAGAGAAAGGTAACATACAAAATAAGGAAAATTGGTAAGAAGAAGAAGCTTCATGAGATAAGCACATTATGCGGAATCCAAACATGTGCTATCATATATGGTCCAAATGAAACTAAAACTAAGCTTTGGCCATCTCACTCGGAGGTTCAAAGGGTGATCAACAAGTTCAATGCAATGTCTGAGATTGATCAAAGGAAAAATATGTTCACTCAAGAAAGCTTTTTGAAGAAAAACTTCAAGAAGGTCCGAGATCAATTGAAGAAAGCACGAGATGAGAACAAGAAGAACGAAATTGAGCTTTTCATGTTCCAATGTTTGGGTGTGATAAACCTTAATCCGAGATATGTTTATGGGAAAAAGAGTAGGGATCAACCGCAACATGGGATAGGAGTGGCTGCAAATGGAATATAA 441 0.3673 MKPTYIVNESKRKVTYKIRKIGKKKKLHEISTLCGIQTCAIIYGPNETKTKLWPSHSEVQRVINKFNAMSEIDQRKNMFTQESFLKKNFKKVRDQLKKARDENKKNEIELFMFQCLGVINLNPRYVYGKKSRDQPQHGIGVAANGI 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0501 146 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 47 IPR002100 GO:0003677|GO:0046983
Lal11g0501 146 ProSiteProfiles MADS-box domain profile. 1 46 IPR002100 GO:0003677|GO:0046983
Lal11g0501 146 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 119 - -
Lal11g0501 146 Coils Coil 82 109 - -
Lal11g0501 146 Gene3D - 8 112 IPR036879 GO:0003677|GO:0046983
Lal11g0501 146 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Lal11g0501 146 SUPERFAMILY SRF-like 4 90 IPR036879 GO:0003677|GO:0046983
Lal11g0501 146 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 4 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0501 Lal-Chr11 3938290 3938784 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0501 1 116 Type I MADS-box Gene Family AT5G48670 49.138 6.31e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal11g0501 SRF-TF 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0501 - - lang:109344582 150.984