Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0495 ATGGTACGTAAGACATTCCTTACGACAAACCAGTCGAGAAGAAAGGTTAGGGAGCCAAAGGAGGAAACAGTGACTCTTGGTCCAGCTGTTAGAGATGGTGAACATGTTTTTGGCGTGGCTCGCATCTTTGCATCATTTAATGACACCTTCATTCATGTGACTGATTTGTCTGGGAGGGAAACTCTTGTACGTATCACTGGTGGAATGAAGGTTAAAGCTGACAGAGATGAGTCATCTCCTTATGCTGCTATGCTTGCAGCACAGGATGTTGCTACCAGATGCAAGGAACTGGGTATAACTGCTCTTCATATCAAGCTCCGTGCTACTGGTGGAAATAAGACAAAAACACCTGGTCCTGGTGCTCAGTCTGCTCTTCGCGCCCTTGCTCGATCGGGAATGAAAATTGGCCGAATAGAGGATGTGACTCCAATTCCATCTGATAGCACTCGTAGAAAGAGTGGTAGAAGGGGTAGAAGGCTTTAA 483 0.4617 MVRKTFLTTNQSRRKVREPKEETVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0495 160 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 7 160 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal11g0495 160 Pfam Ribosomal protein S11 38 156 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal11g0495 160 PANTHER BNAA05G27530D PROTEIN 7 160 - -
Lal11g0495 160 MobiDBLite consensus disorder prediction 1 21 - -
Lal11g0495 160 Gene3D Ribosomal protein S11 11 160 IPR036967 GO:0003735|GO:0005840|GO:0006412
Lal11g0495 160 SUPERFAMILY Translational machinery components 33 158 - -
Lal11g0495 160 MobiDBLite consensus disorder prediction 140 160 - -
Lal11g0495 160 Hamap 30S ribosomal protein S11 [rpsK]. 3 157 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal11g0495 160 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 5 157 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal11g0495 160 ProSitePatterns Ribosomal protein S11 signature. 125 147 IPR018102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0495 Lal-Chr11 3878231 3880452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0495 12 149 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 90.580 4.62e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0495 K02955 K01000 gmx:100780604 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1385 5 16525304 16527604 Lal11g0495 11 3878231 3880452 LSH
Lal3g0349 3 2288503 2291427 Lal11g0495 11 3878231 3880452 LSH