Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0493 ATGGAGCGATTTTCTCGGTCCACTGAAGGTTCTCGCTATGATCCATCGCCGGAATGGACCGGAACTGGTGCTGGGACTGGCCTTGAAGGGTCTATGTGGCAATTGGGGTTAGGTGGTGGTGGTGGTGGCGGCGGTGGAGAGGAATCATACCCGATACGCCCCGGTGAAGCTGATTGTATGTACTATTTGAGGACTGGGGTTTGTGGCTATGGCTCGCGGTGTCGATTCAACCATCCTCCTGACTTTGGCGCGGTTATCAGAACAGCGAGGACCGGAGATTTTCCAGAACGAGTTGGCCAACCTGTGTGCCAGTATTATATGAGGACAGGCTCATGCAAATATGGTCCATCCTGCAAGTACCACCATCCTAAGGAGGGAGGAGGCACTGCTAACCCTGTCTCGCTAAATTATTATGGATATCCGTTGCGGCCGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTCGGTTCAACTTGCAAGTTCCATCATCCACAACCTGCTGTCATCCAAGTTCCACCACTGCCAGCACCAGTCCCCCAAGTTCCACACTTATCTGTGCCCATGCCTTCACCGCTATATCCAACTGTACAGCTTCCATCTGGTCCAACACAACAATTTGGTGTGCTGGTTGCAAGGCCACCTCTTTTATCCGGCTCATTCGTCCAGAGCCCCTATGGCCCTATGGTACTGTCACCTGCCATGGTCCCTTATTCAGGCTGGGATCCTTATCAGGCTACTGCAACTAGCCCTGTACTTCCCTCAAGTACTCCATCTAATGTTGGTCCGGCACAGCTGTATGGGATAACCCAGATAGCTCCATCAGCAGCTGCCTACACTGGACCTTATCAACCTTCTGTTTCCTCGGTTGGACCTTCAAGCAGTAGTCAGAAGGAGCACTCACTTCCAGAAAGGCCAGATCAACCAGAATGCCAGTATTTCTTGAAAACAGGGCAGTGTAAATTTGGTCCATCTTGTAGGTACCACCATCCACCAGCCATGAATTCACTAAAAGCGACTGTGACTCTTAGTCCTTTGGGTCTTCCTTTGCGACCGGGGGCAGCACCTTGCACTCATTATGCACAAAGGGGAGTTTGTAAGTTTGGTCCAGATTGCAAATTTGATCATCCTCCTGTAGCATCACTGAGTTATAGTCCATCTGGTTCTTCTCTGGCTGACATGCCGGTTGCACCCTATCCTGTGGGTTCATCAATTGGTACACTTGCCCCATCATCTTCATCATCGGAGTTGCGGCCTGACCTTAGCTCAGTATCCAACAAGGAACTTGTTTCATTCAGAGTGTCTTCGTCATTGAGCACATCGACCGGGTTAGTCGGCTTGACTTTGTCAACTGGTGGACCTGTTTCTCAATCACACACTCAAACATCTGCTCAGAGTTCAAATCCTTTAGGTGCTCCAAGTACGGCCGCAAGTGGCAATGTCTCTCACACCTCAAGCTAA 1473 0.5024 MERFSRSTEGSRYDPSPEWTGTGAGTGLEGSMWQLGLGGGGGGGGGEESYPIRPGEADCMYYLRTGVCGYGSRCRFNHPPDFGAVIRTARTGDFPERVGQPVCQYYMRTGSCKYGPSCKYHHPKEGGGTANPVSLNYYGYPLRPGEKECSYYVKTGQCKFGSTCKFHHPQPAVIQVPPLPAPVPQVPHLSVPMPSPLYPTVQLPSGPTQQFGVLVARPPLLSGSFVQSPYGPMVLSPAMVPYSGWDPYQATATSPVLPSSTPSNVGPAQLYGITQIAPSAAAYTGPYQPSVSSVGPSSSSQKEHSLPERPDQPECQYFLKTGQCKFGPSCRYHHPPAMNSLKATVTLSPLGLPLRPGAAPCTHYAQRGVCKFGPDCKFDHPPVASLSYSPSGSSLADMPVAPYPVGSSIGTLAPSSSSSELRPDLSSVSNKELVSFRVSSSLSTSTGLVGLTLSTGGPVSQSHTQTSAQSSNPLGAPSTAASGNVSHTSS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0493 490 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Lal11g0493 490 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Lal11g0493 490 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Lal11g0493 490 SMART c3hfinal6 309 336 IPR000571 GO:0046872
Lal11g0493 490 SMART c3hfinal6 355 382 IPR000571 GO:0046872
Lal11g0493 490 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Lal11g0493 490 SUPERFAMILY CCCH zinc finger 100 125 IPR036855 GO:0046872
Lal11g0493 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 358 382 IPR000571 GO:0046872
Lal11g0493 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 80 IPR000571 GO:0046872
Lal11g0493 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 336 IPR000571 GO:0046872
Lal11g0493 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Lal11g0493 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 170 IPR000571 GO:0046872
Lal11g0493 490 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Lal11g0493 490 ProSiteProfiles Zinc finger C3H1-type profile. 355 383 IPR000571 GO:0046872
Lal11g0493 490 SUPERFAMILY CCCH zinc finger 145 171 IPR036855 GO:0046872
Lal11g0493 490 Gene3D - 54 131 - -
Lal11g0493 490 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 480 - -
Lal11g0493 490 Gene3D - 132 178 - -
Lal11g0493 490 PANTHER PROTEIN PHOSPHATASE RELATED 1 480 - -
Lal11g0493 490 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Lal11g0493 490 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Lal11g0493 490 SUPERFAMILY CCCH zinc finger 57 80 IPR036855 GO:0046872
Lal11g0493 490 SUPERFAMILY CCCH zinc finger 312 335 IPR036855 GO:0046872
Lal11g0493 490 MobiDBLite consensus disorder prediction 287 303 - -
Lal11g0493 490 MobiDBLite consensus disorder prediction 287 312 - -
Lal11g0493 490 MobiDBLite consensus disorder prediction 1 49 - -
Lal11g0493 490 MobiDBLite consensus disorder prediction 441 490 - -
Lal11g0493 490 Gene3D - 298 386 - -
Lal11g0493 490 SUPERFAMILY CCCH zinc finger 358 381 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0493 Lal-Chr11 3851814 3862454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0493 1 458 C2H2 Transcription Factor Family AT5G18550 55.864 2.80e-150 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal11g0493 zf-CCCH 5.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0493 - - gmx:100778426 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1388 5 16542064 16551452 Lal11g0493 11 3851814 3862454 LSH
Lal3g0346 3 2269292 2279740 Lal11g0493 11 3851814 3862454 LSH
Lal14g1947 14 18650193 18654488 Lal11g0493 11 3851814 3862454 PCT
Lal7g1429 7 19224568 19228641 Lal11g0493 11 3851814 3862454 PCT
Lal19g1503 19 17401376 17406689 Lal11g0493 11 3851814 3862454 PCT
Lal11g0493 11 3851814 3862454 Lal14g1947 14 18650193 18654488 PCT
Lal11g0493 11 3851814 3862454 Lal7g1429 7 19224568 19228641 PCT
Lal11g0493 11 3851814 3862454 Lal19g1503 19 17401376 17406689 PCT