Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0491 ATGGCGAAACCATCGAAGTCGCATTTCTCTTCCGACGACGAACCACTATCCAATGCTTCCACTTCCTCAGATCAAGAGGACCATCATATCATTGAACTAGAGGACGATGAGGAACTTGAAGCGGTTGCTCGCTCTGCTGGCTCCGGCGACGATGAAAATGCTTTCGATTCCGATGGAGATTCTTCGCCTGCTCAAGATGCTGATGAGGATGATCTGGGTGGAGATGATGTTGATCCTGAGATTAGCAAGCGTGAGAAGGCTAGATTAAGAGAAATGGATAAGATGAAGAAACAGAAGATTCAGGAGATATTGGATGCACAAAATGCTGCCATTGATGCTGATATGAACAACAGAGGAAAGGGGCGGCTGAATTATCTCTTACAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGTGATCAATCTTCATCTAGGAAGTCGAGGGGAAGGGGTCGCCATGCATCAAAAGTAACAGAAGAAGAGGAAGATGAAGAATACCTAAAAGAAGAAGATGGTGGTGCAAATAACACACGTCTGGTGACACAACCATCATGTATCCAAGGAAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGGTTGTATGAAAATGGAATAAATGGAATTCTGGCTGATGAAATGGGTCTTGGTAAGACATTGCAAACTATATCATTATTAGGTTATTTGCATGAGTTCAGAGGAATAAAAGGCCCTCATATGGTGGTTACTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTTTGCGTGCAATAAAGTTCCTTGGAAACCCTGATGAAAGGAGACATATAAAAGAGGAATTATTGGTTGCTGGTAAGTTTGATGTTTGTGTTACTAGTTTTGAAATGGCAATCAAGGAGAAGTCTGCTTTGCGTAGATTTAGTTGGCGCTACATAATTATTGATGAAGCCCATCGAATCAAGAATGAGAATTCCCTCCTGTCTAAAACAATGAGGATCTACAATACAAACTATCGCCTCCTTATTACTGGCACACCACTTCAGAACAATCTTCATGAACTTTGGTCTCTTCTCAACTTTCTTCTGCCAGAAATTTTTAGTTCTGCTGAGACTTTTGATGAATGGTTTCAAATCTCAGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTGCACAAGGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAAAAAGGGTTGCCTCCAAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAGATGCAGAAACAGTATTATAGAGCACTACTTCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAGCGGAAGCGCCTCCTGAATATAGCTATGCAACTACGTAAATGTTGTAATCACCCATATCTTTTTCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGACCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAACTGAAAGAGCGTGATTCAAGGGTCCTTATATTTTCACAGATGACAAGGCTTCTAGACATACTTGAAGATTATTTAATGTTCCGAGGATATCAATATTGCCGCATAGATGGTAATACTGGTGGAGATGAACGTGATGCCTCCATTGACGCTTTCAACAAACCGGGAAGTGAGAAATTTGTTTTCTTGCTATCAACTCGGGCTGGAGGTCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGACAGTGATTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGGTTTTGCACAGAGTATACAATTGAGGAGAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTCGATGCTTTGGTGATTCAGCAAGGGCGGTTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTACAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACAGCTGAGCTCGATGTCAAGATGAAGAAATTTACCGAAGATGCTATCAAGTTTAAGATGGATGAGACTGCTGAGTTGTACGATTTTGATGATGACAAGGATGAGAACAAAGCTGATTTCAAAAAAATTGTGAGCGAAAATCAGATTGAACCATCAAGAAGAGAGCGGAAGCGCAACTACTCAGAGTCTGAATACTTTAAGCAAACAATGCGCCAAGGTGGTCCCACTAAACCAAAAGAGCCTCGTATTCCTAGGATGCCCCAGTTGCATGATTTTCAGTTTTTCAATACACAGAGGCTGAGTGAGCTGTATGAAAAGGAAGTGTGCTATCTCATGAAAGCACATCAGAAGAATCAAGTAAAGGACTCAATAGATGTTGATGAAACAGAGGTCGGACATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAACACCTGCTAGAGGAGGGATTTTCATTGTGGAGTCGGAAGGATTTTAATACTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATTAGAAGTATTGCTTATGAGATGGAAGGAAAAACTGAAGAGGAAGTTGAAAGATACGCCATGGTCTTCAAAGAAAGATACAAGGAATTAAATGACTATGATCGAATTATTAAAAACATTGAGAGGGGGGAGGCTAGAATTTCTCGGAAAGATGAGATCATGAAAGCCATTGGGAAGAAGTTGGATCCGTACAAGAATCCATGGCTAGAGTTGAAGGTACAGTATGGCCAAAACAAAGGGAAGCTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCAGCATTTCGAACATCACCTTTGTTTCATTTTGATTGGTTTGTTAAGTCTCGCACAACACATGAGCTTGCGAGGAGGTGTGACACTCTTATTCGGCTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTAGCCAAGAACAATACCCCATCAAAGCGTGCCTTGGCAAGACAAACAGAGTCTCCATCTTCAAAGAAGCGCAGGCAGTTAACTATTGATGATTATGCAACGGGGAAAAGGAGAAAATAG 3189 0.4155 MAKPSKSHFSSDDEPLSNASTSSDQEDHHIIELEDDEELEAVARSAGSGDDENAFDSDGDSSPAQDADEDDLGGDDVDPEISKREKARLREMDKMKKQKIQEILDAQNAAIDADMNNRGKGRLNYLLQQTELFAHFAKGDQSSSRKSRGRGRHASKVTEEEEDEEYLKEEDGGANNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVTPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIKEELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDERDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDVKMKKFTEDAIKFKMDETAELYDFDDDKDENKADFKKIVSENQIEPSRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVCYLMKAHQKNQVKDSIDVDETEVGHPLTAEELEEKEHLLEEGFSLWSRKDFNTFIRACEKYGRNDIRSIAYEMEGKTEEEVERYAMVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDPYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFHFDWFVKSRTTHELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNNTPSKRALARQTESPSSKKRRQLTIDDYATGKRRK 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0491 1062 Pfam HAND 754 835 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lal11g0491 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 689 IPR027417 -
Lal11g0491 1062 Pfam Helicase conserved C-terminal domain 493 605 IPR001650 -
Lal11g0491 1062 SMART helicmild6 521 605 IPR001650 -
Lal11g0491 1062 Coils Coil 997 1028 - -
Lal11g0491 1062 MobiDBLite consensus disorder prediction 137 174 - -
Lal11g0491 1062 SMART sant 942 1003 IPR001005 -
Lal11g0491 1062 SMART sant 840 889 IPR001005 -
Lal11g0491 1062 Gene3D - 840 894 - -
Lal11g0491 1062 MobiDBLite consensus disorder prediction 1 82 - -
Lal11g0491 1062 Gene3D - 411 703 IPR027417 -
Lal11g0491 1062 MobiDBLite consensus disorder prediction 53 76 - -
Lal11g0491 1062 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 646 IPR001650 -
Lal11g0491 1062 SMART ultradead3 186 378 IPR014001 -
Lal11g0491 1062 MobiDBLite consensus disorder prediction 1039 1062 - -
Lal11g0491 1062 ProSiteProfiles SANT domain profile. 839 891 IPR017884 -
Lal11g0491 1062 MobiDBLite consensus disorder prediction 1011 1028 - -
Lal11g0491 1062 CDD DEXHc_SMARCA1_SMARCA5 187 407 IPR044754 GO:0005524
Lal11g0491 1062 Gene3D iswi atpase 895 927 - -
Lal11g0491 1062 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 753 842 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lal11g0491 1062 Pfam SLIDE 897 1007 IPR015195 GO:0003677|GO:0005634|GO:0006338
Lal11g0491 1062 MobiDBLite consensus disorder prediction 1011 1062 - -
Lal11g0491 1062 CDD SANT 844 887 IPR001005 -
Lal11g0491 1062 MobiDBLite consensus disorder prediction 736 770 - -
Lal11g0491 1062 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 10 1061 - -
Lal11g0491 1062 SUPERFAMILY Homeodomain-like 895 1017 IPR009057 -
Lal11g0491 1062 Gene3D - 191 406 IPR038718 -
Lal11g0491 1062 MobiDBLite consensus disorder prediction 141 161 - -
Lal11g0491 1062 Gene3D - 928 1031 - -
Lal11g0491 1062 PANTHER SNF2/RAD54 HELICASE FAMILY 10 1061 - -
Lal11g0491 1062 SUPERFAMILY Homeodomain-like 844 893 IPR009057 -
Lal11g0491 1062 CDD SF2_C_SNF 491 616 - -
Lal11g0491 1062 MobiDBLite consensus disorder prediction 736 754 - -
Lal11g0491 1062 Pfam SNF2-related domain 203 470 IPR000330 GO:0005524|GO:0140658
Lal11g0491 1062 Gene3D ISWI, HAND domain 742 839 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lal11g0491 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 405 IPR027417 -
Lal11g0491 1062 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 367 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0491 Lal-Chr11 3825373 3834876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0491 182 632 RAD5 or RAD16-like Gene Family AT1G02670 26.729 8.36e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal11g0491 SNF2_N 2.1e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0491 K11654 - gmx:100809750 1878.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1395 5 16600241 16608362 Lal11g0491 11 3825373 3834876 LSH
Lal19g1505 19 17409883 17418044 Lal11g0491 11 3825373 3834876 PCT
Lal11g0491 11 3825373 3834876 Lal19g1505 19 17409883 17418044 PCT