Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0489 ATGGAATCCTCTGCCATTGAACAACGTCTTCATTTTGGAAAAATGGAATATGGGTGCAAACATTATAGGAGAAGATGCATGATTCGTGCTCCATGCTGCAATGAAATTTACTCATGCCGTCATTGTCATAATGAAACAACGAGCCTTTTTTATCGTCACGAACTTGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACAGAGCAACCGGTTGCTCAAGTTTGTACAAACTGTGGTGTCAGAATGGGAGAATATTTCTGTGACATTTGCAAATTTTTCGATGATGACACCGGGAAACAACAGTTTCATTGTGATGAGTGTGGGATCTGCAGAGTTGGTGGTCGAGAGAATTTTTTCCATTGTGACAAGTGTGGGTCTTGCTATTCAGTTACTCTGCGGGGTAATCATTCATGCGTCGAGAACTCCATGAGGCATCACTGTCCCATTTGTTATGAGTACCTTTTTGACTCAATGAAAGATACTAGTGTTATGAAATGTGGCCACACAATGCATTTGGAATGTTACTGCGAGATGATAAACCGTGACAAGTTCTGTTGTCCCATATGCTCCAAGTCGGTGATTGATATGTCTAGGGAGTGGAGGAGAATTGATGAAGAGATCGAAGCAACCGTCATGCCTGAAGATTATCGGTATAAGAAGGTTTGGATACTTTGCAATGACTGCAATGACACAACCCAAGTTTACTTTCACATTATTGGGCAAAAATGTGGTCACTGTAGTTCATATAATACTCGAACAATCGCTCCTCCTGTTCTTCCTCAATGA 795 0.4101 MESSAIEQRLHFGKMEYGCKHYRRRCMIRAPCCNEIYSCRHCHNETTSLFYRHELVRQDVKQVVCSVCDTEQPVAQVCTNCGVRMGEYFCDICKFFDDDTGKQQFHCDECGICRVGGRENFFHCDKCGSCYSVTLRGNHSCVENSMRHHCPICYEYLFDSMKDTSVMKCGHTMHLECYCEMINRDKFCCPICSKSVIDMSREWRRIDEEIEATVMPEDYRYKKVWILCNDCNDTTQVYFHIIGQKCGHCSSYNTRTIAPPVLPQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0489 264 Gene3D - 223 259 - -
Lal11g0489 264 SMART ring_2 150 192 IPR001841 -
Lal11g0489 264 SUPERFAMILY RING/U-box 149 198 - -
Lal11g0489 264 ProSiteProfiles Zinc finger CHY-type profile. 12 83 IPR008913 GO:0008270
Lal11g0489 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 5 264 - -
Lal11g0489 264 SUPERFAMILY Zinc hairpin stack 86 143 IPR037275 -
Lal11g0489 264 ProSiteProfiles Zinc finger RING-type profile. 150 193 IPR001841 -
Lal11g0489 264 Pfam Zinc-ribbon 197 255 IPR039512 -
Lal11g0489 264 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 5 264 - -
Lal11g0489 264 Pfam Zinc finger, C3HC4 type (RING finger) 150 192 IPR018957 GO:0046872
Lal11g0489 264 Pfam CHY zinc finger 19 95 IPR008913 GO:0008270
Lal11g0489 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 222 IPR013083 -
Lal11g0489 264 ProSiteProfiles Zinc finger CTCHY-type profile. 85 149 IPR017921 -
Lal11g0489 264 SUPERFAMILY CHY zinc finger-like 15 84 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0489 Lal-Chr11 3809248 3812833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0489 14 263 C2H2 Transcription Factor Family AT3G18290 39.216 2.06e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0489 K10144 - gmx:100812246 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1397 5 16627042 16633325 Lal11g0489 11 3809248 3812833 LSH
Lal19g1507 19 17427566 17430784 Lal11g0489 11 3809248 3812833 PCT
Lal11g0489 11 3809248 3812833 Lal19g1507 19 17427566 17430784 PCT