Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0485 ATGCTAAGAACCATAATCCAAGACCTCAAATCTCGATCCCATCGTGTGGTGCAAGACGCTTCTTCAATGGATCCAGTGGTGGTTAGCGACGGTTTCACTCAGAGTTTCTGGGCCCACATACCACATGAGCTACTAAGAGAAGTGCTTATCAGAATCGAAGCTTCGGAGGACACGTGGCCGCAGAGGAAGAGCGTTGTTGCATGTGCTGGAGTGTGTCGTAGTTGGAGACACATCACTAAGGAAATTGTTAAGATTCCTCAATTTTCTTCTAAGATCACTTTCCCTATCTCAGTTAAGCAGCCTGGCCCAAGGGAGCATCTCCTCCAATGCTTTATTAAGCGCAACCGATCCACCCAAACATATTACTTGTATCTCAATTTAACTAGTACACTAGGTGATGACGGGAAGTTCCTTCTGGCTGCACGCAAGTGCAGACGTCCCACCTGCACGGATTATATGATCTCTCTAGATGCAGATGATATGTCAAAGGGAAGCAACGCCCATGTTGGGAAACTGAGATCAAATTTCCTCGGAACCAAGTTTACAATCTACGATGCCCAGCCGCCTCATGCAGGAGCAAAGATTCCAAAAAGTCACTCCACTAGGTTGGTGAATCTTAAACAAGTTTCACCCAGGGTTCCTACAGGCCACTATTCAGTGGCACACATCTCATATGAATTGAATGTGCTTGGCTCCAGGGGGCCTAGGAGAATGGATTGTGTCATTGATTCTATTCCTTCCTCTGCAATTGAACCAGGAGGAGTAGCCCCGACACAGACAGAGCATTCTCTTAAAAATATAGACATGTTTCCTTCATTATCTTTTTCTCGATCAAAGTCAATTCATGTGGGAAACTCCGTATCTGGGCCTCTGGGTGATCGAAACGATGGGGGGTTGGTGTTGAAAAACAAGGCTCCCAGGTGGCACGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGACGTGTGACAATTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTTCCCCGGAAAATGGACCTGCTGGACCAGAACATGATAAGATCATTCTCCAATTTGGAAAAGTCGGGAAGGATGCGTTTACGATGGATTACCGGTACCCTATCTCAGCATTTCAAGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATAG 1170 0.4624 MLRTIIQDLKSRSHRVVQDASSMDPVVVSDGFTQSFWAHIPHELLREVLIRIEASEDTWPQRKSVVACAGVCRSWRHITKEIVKIPQFSSKITFPISVKQPGPREHLLQCFIKRNRSTQTYYLYLNLTSTLGDDGKFLLAARKCRRPTCTDYMISLDADDMSKGSNAHVGKLRSNFLGTKFTIYDAQPPHAGAKIPKSHSTRLVNLKQVSPRVPTGHYSVAHISYELNVLGSRGPRRMDCVIDSIPSSAIEPGGVAPTQTEHSLKNIDMFPSLSFSRSKSIHVGNSVSGPLGDRNDGGLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHDKIILQFGKVGKDAFTMDYRYPISAFQAFAICLSSFDTKIACE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0485 389 SUPERFAMILY F-box domain 31 81 IPR036047 GO:0005515
Lal11g0485 389 ProSitePatterns Tub family signature 2. 374 389 IPR018066 -
Lal11g0485 389 Pfam F-box domain 37 83 IPR001810 GO:0005515
Lal11g0485 389 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Lal11g0485 389 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Lal11g0485 389 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Lal11g0485 389 PRINTS Tubby superfamily signature 301 318 IPR000007 -
Lal11g0485 389 PRINTS Tubby superfamily signature 319 335 IPR000007 -
Lal11g0485 389 PRINTS Tubby superfamily signature 346 365 IPR000007 -
Lal11g0485 389 PRINTS Tubby superfamily signature 367 389 IPR000007 -
Lal11g0485 389 Pfam Tub family 98 384 IPR000007 -
Lal11g0485 389 PANTHER TUBBY-RELATED 2 389 - -
Lal11g0485 389 SUPERFAMILY Tubby C-terminal domain-like 86 389 IPR025659 -
Lal11g0485 389 Gene3D Tubby Protein; Chain A 97 383 IPR025659 -
Lal11g0485 389 ProSitePatterns Tub family signature 1. 319 332 IPR018066 -
Lal11g0485 389 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 2 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0485 Lal-Chr11 3781767 3785913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0485 10 389 TUB Transcription Factor Family AT2G47900 71.018 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal11g0485 Tub 1.4e-110 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0485 K19600 - gmx:100778346 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1401 5 16651661 16661606 Lal11g0485 11 3781767 3785913 LSH
Lal3g0333 3 2179109 2182635 Lal11g0485 11 3781767 3785913 LSH