Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0478 ATGGAACCTTCACTTTCCCTTCTTCCTCCAAAAACCATGGCCACCGAAGATCCTTCTTCCCCCATTTGGGACCTCTCTTACCTTCTCGACTTCAATCTCGATGAAACCGATCCCATTCAAACCCTTCCCTCCGTCGATCTTCCCGAAGAATTTCATCTCCCTTCTCCGCCTCACCATATTCTACCTCCTGATAACGATAGGGTTCGAAAACGTGACCCTAGGCTCACGTGCCCTAATTTCCTCGCCGGTCACGTGCCATGTGCTTGCCCTGAGCTCGATGCTATGCTTGATGATCAAGGTTTACCTGAGAAGAAGAGGGTTCGGACCGCACGTGCGTCCGATGTGGTTTTGCGGTGTCAGGTTCCCACGTGCGAGGTTGATATCTCTGACCTCAAGGGTTATCACAAGAGGCATAGGGTTTGTTTGCGTTGCGCGAATGCCGCCACTGTTCTTCTTCATGGGGAGGCCAACAGATACTGTCAGCAGTGTGGGAAGTTTCACATACTACTGGATTTTGATGAAGGTAAACGCAGCTGTAGAAGAAAATTAGAGCGCCATAACAAACGAAGGCGCAGAAAGCCTGCAGATTCTGAAGCTGCTGCTGGTCATGAACTTCAACATGTCACAGAGAATGAGGATTTCAGTTATGACTGGGAAGCAGGAAAAGATTGTTCAAATTCGAGTGGTGAGATAAATGAAAAAGAAGCATCACTGGATCATGGAGATGAGCCAGTTGCTGTTTTGTGCGCAGCTCCTGATGCCCAGAATATTAATAGTAATGATCCATCTCTTGTTGCTGGCGGTGAAACACACGTGACTAATAGGGGAAAAGATGTTCCCAACATTTCTAATTCACCTCCATATTGTGGCAATAAGAGTGCTTATTCATCTAGGTGCCAAACAGGTCGGATATCTTTTAAACTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGGCACCAATCAAATGAATTTGCAGATATTCCAATGGTTGGAGAGTATGCCTTTAGAGCTGGAGGGATATATCCGCCCTGGATGTACAATCCTCACAATTTTTATTTCAATGCCAAAAACTACGTGGATAAATATTATGTTTTAGATAATGAGATTATAATCCGTGAGTTATTTGAAGACCCTCTGCACTATGTGTGTGATCTTGTTGCTCCAGGGAAGATGCTATCTGGAAGAGGTAGTGCTGTAGTTCATTTGGATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTTTGATGAAAGTCGAGGTAAACATGCAGGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGAAGACCTATGGAGTTTGTTGCTTGTGGAAGCAACTTGCTGCAGCCAAAGTTTCGGCTTCTTGTATCATTTTCTGGGAAATATCAGAAGTTTGAGTCATGTGTTCGATCTCCCCATAACTGGACTAGAGATAATGTTTCTTGTGCTTTCGACAATCAGTTATACAAGATACATGTCCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTTATTCCTGTACTCATTGGTGATAAAGAAATTTGCGTTGAAATGAAGAGATTGCAGCAAAAGTTAGATGTGTCTCTCCTTTCTGAACAATTTCAGTCTGCATATGTTGGTTCTGTCTGCAGCTCATGTCAGGCTTTTGCACGTAGACACACATCATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACCCCACTTCAGAAAATTTTGATCGAGTGATGACTGCTTCACAAATTCAAAGATATTGTTATTTGTTAGATTTTCTAATATGCAATGATTCCACAATCATTTTAGGAAAAATATTACCTAATTTAACGATCTTGACAGAAAGCATGAAATCAAATGTTGTGACTAATAGGATGAGTGATATGGACATGACAGAACTGCTGAAATGCATGCATAATGCTAGAGATGTCATTTGTCAGAAACTTCACAAAGGTGGGGGTATAATTGTGGACTCTGAAATGGAAGGCTTTAAAGTTGCTCAGAGCTGCTTCCAAGATAACATGGCATCAGTTGCAATTAACAGTCAGGGTATCATGTCAATAGCAGATGCAAGGTTGGGAGCATCAAGAAGTTCAACTTCTAATGACAGAAATGAAAGGGTAGCACTTTTAAAGAGGGAAATTATAATGAACATGGAAGAGTTGCCTAAATCGTCTTGCCATCGATATCTTCCGAGGGGATTCTCGATCTCTCAACCGGCTATGTTTGTGATTGCTTCAGTTGCTGTTTGTTTTGGGTTGTGTGTAGCTGTCCTTCATCATGGGAGGGTTAGTGAGTTTGCATTATCCATTAGAAGGTGCTTGTTTAACAATTCCTAG 2400 0.4229 MEPSLSLLPPKTMATEDPSSPIWDLSYLLDFNLDETDPIQTLPSVDLPEEFHLPSPPHHILPPDNDRVRKRDPRLTCPNFLAGHVPCACPELDAMLDDQGLPEKKRVRTARASDVVLRCQVPTCEVDISDLKGYHKRHRVCLRCANAATVLLHGEANRYCQQCGKFHILLDFDEGKRSCRRKLERHNKRRRRKPADSEAAAGHELQHVTENEDFSYDWEAGKDCSNSSGEINEKEASLDHGDEPVAVLCAAPDAQNINSNDPSLVAGGETHVTNRGKDVPNISNSPPYCGNKSAYSSRCQTGRISFKLYDWNPAEFPRRLRHQSNEFADIPMVGEYAFRAGGIYPPWMYNPHNFYFNAKNYVDKYYVLDNEIIIRELFEDPLHYVCDLVAPGKMLSGRGSAVVHLDDMIFRVMKDGTSLMKVEVNMQAPRLHYVHPTYFEAGRPMEFVACGSNLLQPKFRLLVSFSGKYQKFESCVRSPHNWTRDNVSCAFDNQLYKIHVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICVEMKRLQQKLDVSLLSEQFQSAYVGSVCSSCQAFARRHTSSSDLLVDIAWLLKDPTSENFDRVMTASQIQRYCYLLDFLICNDSTIILGKILPNLTILTESMKSNVVTNRMSDMDMTELLKCMHNARDVICQKLHKGGGIIVDSEMEGFKVAQSCFQDNMASVAINSQGIMSIADARLGASRSSTSNDRNERVALLKREIIMNMEELPKSSCHRYLPRGFSISQPAMFVIASVAVCFGLCVAVLHHGRVSEFALSIRRCLFNNS 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0478 799 MobiDBLite consensus disorder prediction 191 206 - -
Lal11g0478 799 Gene3D - 115 180 IPR036893 GO:0003677|GO:0005634
Lal11g0478 799 Pfam SBP domain 119 193 IPR004333 GO:0003677
Lal11g0478 799 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 17 326 - -
Lal11g0478 799 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 376 796 - -
Lal11g0478 799 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 326 IPR044817 GO:0003677
Lal11g0478 799 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 376 796 IPR044817 GO:0003677
Lal11g0478 799 ProSiteProfiles Zinc finger SBP-type profile. 116 193 IPR004333 GO:0003677
Lal11g0478 799 SUPERFAMILY SBT domain 117 196 IPR036893 GO:0003677|GO:0005634
Lal11g0478 799 MobiDBLite consensus disorder prediction 184 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0478 Lal-Chr11 3714014 3721072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0478 8 792 SBP-box Gene Family AT5G18830 41.758 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal11g0478 SBP 9.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0478 - - aprc:113863838 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1409 5 16722761 16730167 Lal11g0478 11 3714014 3721072 LSH