Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0446 ATGATGCAGCCAGGAGGACCCGGAGGTATGGCTCCACCTCAACAACCCTACGTCATGATGCCACCTCAGCCTCAACCCCCTCCCATGTGGCAACAACCACCGCATCAGTCGGTTGCTCCGCCGCAACAGCAGCAATCTCAGCCTACCAACGCCGATGAGGTCCGTACACTATGGATCGGTGATTTGCAGTACTGGATGGATGAGAACTATCTATACCAATGCTTTGCTCACACCGGAGAGGTGGCCTCTGTGAAAGTTATTCGTAATAAGCAAACTAATCAATCAGAAGGATATGGGTTTATTGAGTTCAATAGTCGTGCTGGTGCTGAGAGAGTACTTCAAAGTTACAATGGAGCCATTATGCCCAATGGTGGGCAGCCCTTCAGGTTGAACTGGGCAACTTTCAGTGCGGGTGAGAGGCGTCACGATGACAGTCCTGATTACACCATATTTGTTGGTGACTTAGCTGCAGATGTCACCGACTATCTCTTAACAGAGACATTTAGGTCCCGTTTTAACTCTGTGAAGGGTGCAAAAGTTGTGATTGATAGGCTCACTGGTCGGTCTAAGGGGTATGGTTTTGTGAGGTTTGCAGATGAAAATGAACAAGCAAGGGCTATGACTGAGATGCAAGGTGTTCTTTGTTCAACAAGGCCCATGCGGATTGGCCCAGCTGCCAATAAAAACCTGGGAACACCACAAAAAGTTTCATATCAGAATCCTCAAGGTCAAGGCTCCCAGAACGAGAATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGCAACTGATGATTATCTGAGGCAAGTTTTTAGCCAGTATGGAGAGTTAGTTCATGTGAAGATTCCATCAGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTGTGCAGAGGAGGCACTACGGGTTCTAAATGGAACACTGTTGGGTGGACAAAATGTACGTCTTTCATGGGGCCGCAGTCCTGCAAACAAACAGGCTCAGCCAGATTCAAACCAATGGAATGGTGGCGGCAATGGTGGATATCATGGATATCCTCAGCAGGGTTATGAAAATTATGGCTATGCTGCTCCTCCTGCCGCAGCTGCGCAGGATCCAAACTTGTATGGCAGTTATCCAGCAGGGTATGCCAATTACCAACCACCACAACAACAGCAACAAATAGGGTATAGTTGA 1194 0.4757 MMQPGGPGGMAPPQQPYVMMPPQPQPPPMWQQPPHQSVAPPQQQQSQPTNADEVRTLWIGDLQYWMDENYLYQCFAHTGEVASVKVIRNKQTNQSEGYGFIEFNSRAGAERVLQSYNGAIMPNGGQPFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLTETFRSRFNSVKGAKVVIDRLTGRSKGYGFVRFADENEQARAMTEMQGVLCSTRPMRIGPAANKNLGTPQKVSYQNPQGQGSQNENDPNNTTIFVGNLDPNATDDYLRQVFSQYGELVHVKIPSGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPANKQAQPDSNQWNGGGNGGYHGYPQQGYENYGYAAPPAAAAQDPNLYGSYPAGYANYQPPQQQQQIGYS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0446 397 CDD RRM2_SECp43_like 147 226 - -
Lal11g0446 397 MobiDBLite consensus disorder prediction 383 397 - -
Lal11g0446 397 MobiDBLite consensus disorder prediction 230 261 - -
Lal11g0446 397 MobiDBLite consensus disorder prediction 224 261 - -
Lal11g0446 397 Gene3D - 15 142 IPR012677 -
Lal11g0446 397 MobiDBLite consensus disorder prediction 378 397 - -
Lal11g0446 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 227 IPR000504 GO:0003723
Lal11g0446 397 MobiDBLite consensus disorder prediction 1 51 - -
Lal11g0446 397 MobiDBLite consensus disorder prediction 36 51 - -
Lal11g0446 397 CDD RRM3_NGR1_NAM8_like 254 325 - -
Lal11g0446 397 SUPERFAMILY RNA-binding domain, RBD 239 354 IPR035979 GO:0003676
Lal11g0446 397 MobiDBLite consensus disorder prediction 9 35 - -
Lal11g0446 397 SUPERFAMILY RNA-binding domain, RBD 22 135 IPR035979 GO:0003676
Lal11g0446 397 MobiDBLite consensus disorder prediction 325 344 - -
Lal11g0446 397 MobiDBLite consensus disorder prediction 325 349 - -
Lal11g0446 397 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 13 394 - -
Lal11g0446 397 SMART rrm1_1 149 223 IPR000504 GO:0003723
Lal11g0446 397 SMART rrm1_1 56 131 IPR000504 GO:0003723
Lal11g0446 397 SMART rrm1_1 256 323 IPR000504 GO:0003723
Lal11g0446 397 SUPERFAMILY RNA-binding domain, RBD 142 242 IPR035979 GO:0003676
Lal11g0446 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 327 IPR000504 GO:0003723
Lal11g0446 397 Gene3D - 232 362 IPR012677 -
Lal11g0446 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 320 IPR000504 GO:0003723
Lal11g0446 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 213 IPR000504 GO:0003723
Lal11g0446 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 122 IPR000504 GO:0003723
Lal11g0446 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 135 IPR000504 GO:0003723
Lal11g0446 397 Gene3D - 147 223 IPR012677 -
Lal11g0446 397 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 13 394 - -
Lal11g0446 397 CDD RRM1_SECp43_like 56 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0446 Lal-Chr11 3382231 3386385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0446 57 315 Eukaryotic Initiation Factors Gene Family AT4G34110 27.547 2.11e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0446 - - aprc:113864230 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1445 5 17005679 17009964 Lal11g0446 11 3382231 3386385 LSH
Lal3g0288 3 1885397 1889699 Lal11g0446 11 3382231 3386385 LSH
Lal14g1975 14 18796734 18800004 Lal11g0446 11 3382231 3386385 PCT