Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0430 ATGGATTGGTCTAGGGGTCACACCATCGGACGGGGCTCTACGGCCGCTGTCTATAAAGCCGAGTCTCGGCACACTGGTAAGGTTTTTGCTGTGAAGTCGGCCGAGCTCCACTGGTCTGATTTTTTGAAGAGAGAAAAGGACATTCTTTCAACTTTGAATTGTCCTCAAATTGTGTCATACCAAGGTTTTGATGTTACATTCGAAAATGGTGCACACTACTACAACTTGTTCATGGAATATGCGCCACGTGGCACCATCGCCGACGTGGTTCGCCATGATAAGGTGGTGGAAGAAGCTCCGGTGAGGTCCTACACGCGCCAAATCCTGCAAGGGCTGAAATATCTTCATGCAAATGGGATAGTGCATTGCGACGTGAAGGGACAGAACGTGTTGGTCACGGACCAAGGTGCGAAGCTTGCTGACTTTGGTTGCGCCAAGAGGGTCAGCGAGGTGGCAGCACCGGTGGCGGGAACGCCGGCGTTCATGGCACCTGAGGTGGCGCGTGGGGAGAAACAGGGGTTCCCTGCTGACGTGTGGGCACTGGGGTGCACTGTTTTGGAGATGATCACCGGGAAGCAACCGTGGCAAGGCGTTTCTGAGCCGGCGGTGGTGCTTTACCGGGTTGGGTACTCCGGCGAGGTTCCGGTGATTCCAGATTATGTGTGTGAGGAAGGGAAAGATTTTTTGAGCAAGTGTTTTAAAAGTGACCCTTTTGAAAGATGGATAGTGAGTGAGCTTCTGAATCATGATTTTGTTAGAGAATTGAATTTGGTGTGTAATGAATTTGCATTTGCATGTGATTTGAAGACACCAACAAGTGTGTTGGAAAAAGGGTCCCTTTGGGACACAAAGACAAATCAGGATGTGACACATGGTAGTTCTTCATGGAATTTTTCTAGTCCTAGGGACAGAATTAATATGTTAAGAACTGCTCAGCCTTTTTGGCAATGGGACGACGACGATGATCAAGTGGAATGGGTCATAGTCAGAAGTGTCGCAACCCGATTTTCGGTTGAAAATCCAGTCTGCGATTTAAGAAGAGGTGAGACTAGTAGCAGTGACAAAGAAGTATTGGAGGTAATGTCCTTGGGGTCTATTGACAAACTGGAGGATTATGGGCCAGACACTGTTTGCAATTGCATGCTTAAAGAGTACATTGGTTTGGTCTCTTTTTATGAAATAAAAATTATGGTTGCCAATGTATCAGCTTCACTATGA 1218 0.4754 MDWSRGHTIGRGSTAAVYKAESRHTGKVFAVKSAELHWSDFLKREKDILSTLNCPQIVSYQGFDVTFENGAHYYNLFMEYAPRGTIADVVRHDKVVEEAPVRSYTRQILQGLKYLHANGIVHCDVKGQNVLVTDQGAKLADFGCAKRVSEVAAPVAGTPAFMAPEVARGEKQGFPADVWALGCTVLEMITGKQPWQGVSEPAVVLYRVGYSGEVPVIPDYVCEEGKDFLSKCFKSDPFERWIVSELLNHDFVRELNLVCNEFAFACDLKTPTSVLEKGSLWDTKTNQDVTHGSSSWNFSSPRDRINMLRTAQPFWQWDDDDDQVEWVIVRSVATRFSVENPVCDLRRGETSSSDKEVLEVMSLGSIDKLEDYGPDTVCNCMLKEYIGLVSFYEIKIMVANVSASL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0430 405 PANTHER MAP KINASE KINASE KINASE 1 355 - -
Lal11g0430 405 SUPERFAMILY Protein kinase-like (PK-like) 2 298 IPR011009 -
Lal11g0430 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Lal11g0430 405 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g0430 405 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 355 - -
Lal11g0430 405 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g0430 405 Gene3D Transferase(Phosphotransferase) domain 1 2 304 - -
Lal11g0430 405 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g0430 405 CDD STKc_MAPKKK 2 252 - -
Lal11g0430 405 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0430 Lal-Chr11 3228729 3230330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0430 1 330 MAP Kinase Kinase Kinase AT1G05100 48.851 3.66e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal11g0430 Pkinase 1.7e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0430 K20716 - gmx:100802174 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0430 11 3228729 3230330 Lal11g0430 11 3228729 3230330 ECH
Lal9g0367 9 2447080 2448318 Lal11g0430 11 3228729 3230330 ECH
Lal5g1470 5 17162773 17164357 Lal11g0430 11 3228729 3230330 LSH