Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0423 ATGAACACTTTAACCACTCTCCTAATCCTCTCAACTTTCATACCCACCATTATTGCTTCATCATACGATGCATATTCATATGATCCAAGCTATAATTCACATGTTCCAAGCGATATACCCACTACTCCAAACGATGTAGACATGAACCAAATAGATTCATGTTGGAGAGCCAAAACAGATTGGGCATCAAACCGAAGAGCCTTGGCTGATTGTGCAATTGGCTTTGGAAAAAACGCCATTGGAGGCAAGTTTGGAGCAATATATGAAGTTACTGATCCTTCTGATAACCCTAAAAACCCAAAACCAGGTACACTTCGTTATGGTGCAATACAAACACAACCCTTATGGATAATATTCTCAAAGAACATGGTTATCCATCTAAAGAATGAGTTAATGGTGAATAGCTACAAAACCATTGATGGAAGAGGAGCCAAAGTAGATATTTCAAATGGACCATGCATTACAATACAAGATGTTAGTAATGTGATTGTGCATGGAATTAGTATCCATGATTGTAAACCAGGTACTTCTGGCATGGTGAGGAGTAGTGTTAACCATGTTGGGTATCGTGAAGGTTCTGATGGAGATGCTATTAGTGTATTTGCTTCGTCCAATATTTGGATTGATCATTGTTTTTTGGCTCGTTGCTTTGATGGTCTTATTGATGTTACTCATGCATCAACTGCTATCACCATCTCTAACAATTATTTCACACACCATGACAAAGTGATGCTGCTAGGACACAATGATGCATTCAGCGCAGACAGAATATTGAAAGTAACAGTAGCTTTCAATCGCTTTGCCAGTGGCTTAGTACAAAGATTGCCAAGGTTAAGATTTGGTTATGCCCATGTTGTGAACAACCATTATGAGGAGTGGATCATGTATGCCATTGGTGGCAGTGCGGACCCTACTATTCTCAGTGAAGGGAACTACTTCATAGCTCCAAATGATTATACTGCCAAAGAGGTTACAAAGAGGGAAACTACCAAAAAGTGGAAAAAATGGAAATGGAGAAGTTATGGAGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCTGGGTATGGAAGTTGTGCCCCACCATATTCACCTGATCAAAATTTTATTGCACACAATGTATCCTTGGTGCCTTCATTGACTATCAATGCAGGTCCACTAAACTGTGTTGTTGGCAAAGCATGTTAA 1188 0.3923 MNTLTTLLILSTFIPTIIASSYDAYSYDPSYNSHVPSDIPTTPNDVDMNQIDSCWRAKTDWASNRRALADCAIGFGKNAIGGKFGAIYEVTDPSDNPKNPKPGTLRYGAIQTQPLWIIFSKNMVIHLKNELMVNSYKTIDGRGAKVDISNGPCITIQDVSNVIVHGISIHDCKPGTSGMVRSSVNHVGYREGSDGDAISVFASSNIWIDHCFLARCFDGLIDVTHASTAITISNNYFTHHDKVMLLGHNDAFSADRILKVTVAFNRFASGLVQRLPRLRFGYAHVVNNHYEEWIMYAIGGSADPTILSEGNYFIAPNDYTAKEVTKRETTKKWKKWKWRSYGDEFLNGAYFVPSGYGSCAPPYSPDQNFIAHNVSLVPSLTINAGPLNCVVGKAC 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0423 395 Gene3D - 48 388 IPR012334 -
Lal11g0423 395 Pfam Pectate lyase 128 313 IPR002022 -
Lal11g0423 395 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Lal11g0423 395 PRINTS Pollen allergen Amb family signature 94 119 IPR018082 -
Lal11g0423 395 PRINTS Pollen allergen Amb family signature 130 146 IPR018082 -
Lal11g0423 395 PRINTS Pollen allergen Amb family signature 194 215 IPR018082 -
Lal11g0423 395 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Lal11g0423 395 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Lal11g0423 395 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Lal11g0423 395 PRINTS Pollen allergen Amb family signature 366 389 IPR018082 -
Lal11g0423 395 SMART amb_all 122 319 IPR002022 -
Lal11g0423 395 PANTHER PECTATE LYASE 12 394 - -
Lal11g0423 395 PANTHER PECTATE LYASE 18-RELATED 12 394 IPR045032 GO:0030570
Lal11g0423 395 SUPERFAMILY Pectin lyase-like 48 385 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0423 Lal-Chr11 3165207 3167763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0423 3 395 Polysaccharide Lyase AT4G22080 64.213 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0423 K01728 - gmx:100803229 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0423 11 3165207 3167763 Lal11g0423 11 3165207 3167763 ECH