Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0415 ATGGAAGGTGGTAGTTCAAATGGCACTTCTTGTTTGATGCCTTTTGGAGAGAACAGTGGTGGGCTATATCCAATAATGGTGATGCCTTTAGTGACTTCTCATGATGATGGTCATCATCCAATAAATCCTCATCATAATCTTAATCATAATAATAGTAACAATAATTTTACAACTATTGGTACTATTAATGCTAACACAAACTGTCTCTTCCCTTCTATGCCTTCTTCCACTAATGACCATCACCACCAAAACCGCAACAACAACAACAGTGGAGGAAACCCTCCTCTCATGCTAGAGAATAATCACAACACCAACAACAGCAACACTGGAATAGGTTATTATTTCATGGAAAGTGACCATAACAACAACAATGGAAGCTCCTCTTCCTCTTCTGCTGACAAGGCCAAAATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCATACGTCAGTTGTCAAAAGGTTGGAGCACCGCCTGATGTGGTGGCAAGGTTAGAAGAAGCATGTGCATCTGCAGTGGCTATGGCCGGAGACACAGCTGGATCAGCATGCCTAGGTGAAGATCCAGCACTAGATCAGTTCATGGAGGCTTACTGTGAGATGCTGACCAAATATGAACAAGAACTCTCCAAACCCTTGAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAATGCCAGTTCAAAAATCTCACTGTTTCTTCTGATCTTGCTTGTAATGAAGCTACAGAAAGGAATGGATCATCCGAAGAAGATGTCGATCTACACAACATTATAGATCCTCAGGTCGAGGATCGGGAGTTGAAGGGTCATCTTTTGCGCAAGTACAGTGGATACTTAGGTAGTCTAAAACAAGAATTCATGAAGAAGAGGAAAAAAGGAAAGCTCCCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAACTGGCTCTGGCAGAATCAACAGGTTTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCCATTTTATTCCAATATGATGGATCCAAACCACCCACAATATTACATGGATAATGTTCTAAGCCATCCATTTCCTATGGATCTTTCCAACACAATGCTCTAG 1164 0.4218 MEGGSSNGTSCLMPFGENSGGLYPIMVMPLVTSHDDGHHPINPHHNLNHNNSNNNFTTIGTINANTNCLFPSMPSSTNDHHHQNRNNNNSGGNPPLMLENNHNTNNSNTGIGYYFMESDHNNNNGSSSSSSADKAKIMAHPHYHRLLAAYVSCQKVGAPPDVVARLEEACASAVAMAGDTAGSACLGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTVSSDLACNEATERNGSSEEDVDLHNIIDPQVEDRELKGHLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMPFYSNMMDPNHPQYYMDNVLSHPFPMDLSNTML 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0415 387 Pfam KNOX1 domain 134 171 IPR005540 GO:0003677|GO:0005634
Lal11g0415 387 CDD homeodomain 299 351 IPR001356 GO:0003677
Lal11g0415 387 SMART KNOX1_2 131 175 IPR005540 GO:0003677|GO:0005634
Lal11g0415 387 ProSitePatterns 'Homeobox' domain signature. 325 348 IPR017970 GO:0000981|GO:0006355
Lal11g0415 387 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 376 - -
Lal11g0415 387 Pfam ELK domain 267 288 IPR005539 GO:0003677
Lal11g0415 387 SMART ELK_2 267 288 IPR005539 GO:0003677
Lal11g0415 387 Pfam KNOX2 domain 186 232 IPR005541 GO:0003677|GO:0005634
Lal11g0415 387 Pfam Homeobox KN domain 307 346 IPR008422 GO:0003677|GO:0006355
Lal11g0415 387 MobiDBLite consensus disorder prediction 70 103 - -
Lal11g0415 387 SMART HOX_1 289 354 IPR001356 GO:0003677
Lal11g0415 387 PANTHER - 1 376 - -
Lal11g0415 387 Gene3D - 292 354 - -
Lal11g0415 387 SUPERFAMILY Homeodomain-like 289 361 IPR009057 -
Lal11g0415 387 SMART KNOX2_2 182 233 IPR005541 GO:0003677|GO:0005634
Lal11g0415 387 ProSiteProfiles ELK domain profile. 267 287 IPR005539 GO:0003677
Lal11g0415 387 ProSiteProfiles 'Homeobox' domain profile. 287 350 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0415 Lal-Chr11 3113533 3120717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0415 134 387 Homeobox Transcription Factor Family AT1G62360 77.567 1.33e-126 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal11g0415 KNOX2 7.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0415 - - lang:109345346 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0268 3 1761044 1768692 Lal11g0415 11 3113533 3120717 LSH