Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0411 ATGAAGCCTACATACATAGCCAATGAATCTAAGAGAAAGGTAACATACAAAGTAAGGAAGATTGGTATGAAGAAGAAGCTTCATGAGATAAGCACACTATGTGGAATTCAAGCGTGTGCTATCATTTATGGTCAATATGAAACTGAACCAGAGGTTTGGCCATCTCACTCGGAGGTTCAAAGGGTGATAAACAGGTTCAATGCAATGTCTGAGATTGATCAAAGGAAAAATATGTTCAGTCAAGAAAGCTTTTTGAAGCAAAACTTCAACAAGGCCGAAGATCAACTGAAGAAAACACGAGATGAGAACAGAAAGAACGAAATGGAGCTTTTCATGTTGCAATGCTTGGGTGCTGGGAGCATTATTAACAATGGTGACACTATTGATATGAATTATTTATTGTTGGTGATAAATTATAATCTGAGATATGTTTATGGGAAAAAGAGTAGGGATCAACCGCAACATGGGATAGAAGTGGCTGCGAATGGAACAAAAACTTCTAGTGGAGAAAGGGAAATTGTGGGTGGTCATAACCAAGAGGTAGTGCAGACCAATATGGGTATCATGCAGAGGCTGAGTTGGTCTTCTGACTCAGCCAATGGGAGAGGTAACGTGATGAATCCATTTAGAGGTTATAATCTCTGA 645 0.3922 MKPTYIANESKRKVTYKVRKIGMKKKLHEISTLCGIQACAIIYGQYETEPEVWPSHSEVQRVINRFNAMSEIDQRKNMFSQESFLKQNFNKAEDQLKKTRDENRKNEMELFMLQCLGAGSIINNGDTIDMNYLLLVINYNLRYVYGKKSRDQPQHGIEVAANGTKTSSGEREIVGGHNQEVVQTNMGIMQRLSWSSDSANGRGNVMNPFRGYNL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0411 214 ProSiteProfiles MADS-box domain profile. 1 45 IPR002100 GO:0003677|GO:0046983
Lal11g0411 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 45 IPR002100 GO:0003677|GO:0046983
Lal11g0411 214 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Lal11g0411 214 SUPERFAMILY SRF-like 4 89 IPR036879 GO:0003677|GO:0046983
Lal11g0411 214 Coils Coil 82 109 - -
Lal11g0411 214 Gene3D - 8 92 IPR036879 GO:0003677|GO:0046983
Lal11g0411 214 PANTHER MADS BOX PROTEIN 4 154 - -
Lal11g0411 214 CDD MADS_SRF_like 5 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal11g0411 214 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0411 Lal-Chr11 3066211 3066855 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0411 1 144 Type I MADS-box Gene Family AT5G48670 48.611 3.98e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal11g0411 SRF-TF 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0411 - - lang:109344582 231.491