Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0409 ATGAAATATAAGATGAAGCCTACATACATAGCCAATGAATCTAAGAGAAAGGTAACATACAAAGTAAGGAAAATTTGTATGAAGAAGAAACTTCATGAGATAAGCACATTATGCGGAATCCAAGCATGTGCTATCTTTTATGGTCCAAATGAAACTGAACCAGAGGTTTGGCCATCTCACTCACAGGTTCAAAGGTTGATCAATAGGTTCAATGCAATGTCTGAGATCGATCAAAGGAAAAATATGTCCACTCAAGAAAGCTTTTTGAAGAAAAACTTCGAAAAGGCCCGAGATCAATTGAAGAAAGCACGAGATGAGAACAAGAAGAACGAAATGGAGCTTTTCATGTTCCAGTGTTTGGGTGTCGGGAGCATTATTAACACTGGTGACACTATTAATATGAATTATTTATTGTTGATGATAAACCAGAATCTGAGAGATATTTATGGGAAAGAGAGTAGGGATCAACCACAACATGGGATAGGAATGGCTCTAAATGGAACAGAATCTTCGAGTGGAGAAAGGAAAACTGTGGGTGGTCATAACCAAGAGGTAGTGCAGACTAATATGGGTGTCATGCAGAGGTTGGGTTTGTCTTCTGACTTAGCCAATGGGAGAGAAATGTGA 627 0.386 MKYKMKPTYIANESKRKVTYKVRKICMKKKLHEISTLCGIQACAIFYGPNETEPEVWPSHSQVQRLINRFNAMSEIDQRKNMSTQESFLKKNFEKARDQLKKARDENKKNEMELFMFQCLGVGSIINTGDTINMNYLLLMINQNLRDIYGKESRDQPQHGIGMALNGTESSSGERKTVGGHNQEVVQTNMGVMQRLGLSSDLANGREM 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0409 208 MobiDBLite consensus disorder prediction 152 179 - -
Lal11g0409 208 Coils Coil 86 113 - -
Lal11g0409 208 CDD MADS_SRF_like 1 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal11g0409 208 Gene3D - 12 95 IPR036879 GO:0003677|GO:0046983
Lal11g0409 208 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Lal11g0409 208 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 156 - -
Lal11g0409 208 PANTHER MADS BOX PROTEIN 4 156 - -
Lal11g0409 208 SMART madsneu2 2 59 IPR002100 GO:0003677|GO:0046983
Lal11g0409 208 MobiDBLite consensus disorder prediction 163 179 - -
Lal11g0409 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 51 IPR002100 GO:0003677|GO:0046983
Lal11g0409 208 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0409 Lal-Chr11 3055892 3057332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0409 4 148 Type I MADS-box Gene Family AT5G48670 46.897 2.02e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal11g0409 SRF-TF 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0409 - - lang:109344582 225.328