Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0404 ATGAAGCCTACATACATAGTCAATGAATCTAAGAGAAAGAAGAAGCTTCATGAGATAAGCACATTATGCGGAATCCAAACATGTGCTATCATATATGGTCCAAATGAAACTAAAACTAAGCTTTGGCCATCTCACTCGGAGGTTCAAAGGGTGATCAACAAGTTCAATGCAATGTCTGAGATTGATCAAAGGAAAAATATAAAGCTTTTTGAAGAAAAACTTCAGAAGGTCCGAGATCAATTGAAGAAAGCACGAGATGAGAACAAGAAGAACGAAATTGAGCTTTTCATGTTCCAATGTTGGGTGTCGGAAGCATTATTAACAAAGAGGTTGGGTTGGTCTGCTGACTTAGCCAATGGGAGAGGTAATGTGATGATTTCATTTAGAGGTTTTAATCTCTTAAGAGGATGTGGGAATGACCCTTCTTTCCCTTGA 435 0.3816 MKPTYIVNESKRKKKLHEISTLCGIQTCAIIYGPNETKTKLWPSHSEVQRVINKFNAMSEIDQRKNIKLFEEKLQKVRDQLKKARDENKKNEIELFMFQCWVSEALLTKRLGWSADLANGRGNVMISFRGFNLLRGCGNDPSFP 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0404 144 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 104 - -
Lal11g0404 144 SUPERFAMILY SRF-like 8 68 IPR036879 GO:0003677|GO:0046983
Lal11g0404 144 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 13 104 - -
Lal11g0404 144 Coils Coil 67 94 - -
Lal11g0404 144 Gene3D - 9 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0404 Lal-Chr11 3019529 3020199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0404 1 102 Type I MADS-box Gene Family AT5G48670 36.752 2.39e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal11g0404 SRF-TF 8.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0404 - - lang:109344582 112.464