Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0401 ATGAAGCCTACATTCATAGTCAATGAATCTAAGAGAAAGGTAACATACAAAGTAAGGAAAATTGGTACGAAGAAGAAGCTTCATGAGATAAGCACATTATGCGGAATCCAAACATGTGCTATCATATATGGTCCAAATGAAACTAAAACTAAGCTTTGGCCATCTCAATCGGAGGTTCAAAGGGTGATCAACAAGTTCAATGGAATGTCTGAGATTGATCAAAGGAAAAATATGTCCACTCAAGAAAGCTTTTTGAAGAAAAACTTCGAGAAGGTCCGAGATCAATTGAAGAAAGCACGAGATGAGAACAAGAAGAACGAAATTGAGCTTTTCATGTTCCAATGCTTGGGTGTCGGAAGCATTATTAACAAAGGTGACACTATTGATATGAATTATTTATTGAAGGTGATAAACCTTAATCTGAGATATGTTTATGGGAAAAAGAGTGGGGATCAACCGCAACATGGGATAGGAGTGGCTGCAAATGGAATATAA 495 0.3677 MKPTFIVNESKRKVTYKVRKIGTKKKLHEISTLCGIQTCAIIYGPNETKTKLWPSQSEVQRVINKFNGMSEIDQRKNMSTQESFLKKNFEKVRDQLKKARDENKKNEIELFMFQCLGVGSIINKGDTIDMNYLLKVINLNLRYVYGKKSGDQPQHGIGVAANGI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0401 164 ProSiteProfiles MADS-box domain profile. 1 46 IPR002100 GO:0003677|GO:0046983
Lal11g0401 164 Coils Coil 82 109 - -
Lal11g0401 164 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 151 - -
Lal11g0401 164 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Lal11g0401 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 47 IPR002100 GO:0003677|GO:0046983
Lal11g0401 164 SUPERFAMILY SRF-like 4 89 IPR036879 GO:0003677|GO:0046983
Lal11g0401 164 Gene3D - 8 91 IPR036879 GO:0003677|GO:0046983
Lal11g0401 164 PANTHER MADS BOX PROTEIN 4 151 - -
Lal11g0401 164 CDD MADS_SRF_like 5 79 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0401 Lal-Chr11 3002183 3002677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0401 1 162 Type I MADS-box Gene Family AT5G48670 40.000 6.25e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal11g0401 SRF-TF 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0401 - - lang:109344582 185.652