Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0396 ATGGGGAAATCAGGGGGTAGAAGAAAAAAGGGTAGTGCTTCAAATTCAAACAAAGTTTCTGTTGATAATTCAGTGGCCCCAATTGCTAATGGTGATGTGGAATTGGATTCCTCAATATTTTTGAAGAGAGCCCATGAGCTCAAAGAAGAGGGGAATAGAAGGTTCCAGAATAAGGACTTTGTTGGTGCCTTACAACAATATGAGAATGCTCTTAAACTAACCCCTAAGACCCACCCGGATAGGGCTGTTTTCCATAGCAACAAAGCTGCTTGTTTGATGCAAATGAAACCTATTGATTATGAGACTGTGATTGCCGAGTGCACCATGGCACTTCAGGTGCAGCCGCAATTTGTTAGGGCGCTCCTTCGGAGGGCTCGGGCATTTGAGGCTTTAGGGAAGTATGGAATGGCTATGCTTGATGTGCAAGTGCTGTTGGGAGTTGAACCTAATCATGGAGACACTTTGGAGATTGCTCAGAGATTGAGGACCACATTGGGAACACGCCAGGAAGCCCAGCAGGACCTTCATAGTCGCCCTTCCCCTGCTGCCCTTGGTGCTTCTGCGGTCCGTGGTGCTCCTTTTGCAGGTTTAGGGCCATCTTTACCTGCCAGGCCAGGACCTAAGAAGGGTGCAAGTGCAGCTGTCGGTTCGGTTGTGTCACCTAATTACAAGACAGAGAATCCTCAAGTGGTTTTATCTGCTGAAAATGGTCTTGAGAACAAGTCTCAATTGCCAAAAATTGTGTTGAAGCCCTCAAATGGCTCTGCTAGTTCTTCTAATTCAAGAAAGGGAAACCAGAAGGAACATAGGCAGCATTCGGAGGTTTTAGTTCGGTGGAGACCTTTGAAGCTTGTTTATGATCATGACATCAGGCTTGCCGAGATGCCAGTGAATTGCAGTTTTAGAGTGCTTAGAGAATTAGTGACCAAAAGATTTCCATCATCGAAGTCAGTTTTGATCAAGTATAAGGATAATGACGGTGATTTAGTTACTATAACCTCTATGGATGAACTCAGATTGGCAGAGTGTAGTGTGGATAGCCATCTCACGAGAGAACCTGAAGCAGATAAAAGTGATTCAGTTGGGATGCTGAGACTGAATATTGTCGAAGTTAGTCCTGAGCAGGAGCCACCTTTATTGGATGAAGAGGAAGAAAAACCTGTTGAGAGTGAAGGCCTCAAGGGAGATGAGAGTGAGTCTCATTCACCCAGTGAATCTGTCTCTGAAGCCCCTGTTGCCGAGGCTGATAAGATAGACAAAGATGCCCCAAAGGAAAAGCCAGGTAACACAGAAGATACTGAATGCAAGGAAGTGGAGATGGATGATTGGTTGTTTGAATTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGATCCAGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGTTTTGTTCAGAGGCACTTGAGGAAATTGTAAGTGGTGAGGAGGCTCAGGATCTCTTTGACAATGCTGCTTCAAAGTTCCAGGAGGTGGCTGCTTTGGCATTGTTCAATTGGGGAAATGTTTACATGTGTGCTGCTAGGAAGCGTATCCCCTTAGACGAGTCAGCTGGGGAGGAAATAGTGGCAGAACGGACTCAAGTCACTTATGACTGGGTCAAGGAAAAATATTCATTGGCCAGGGAGAGGTACGAGCAAGCACTTGTAATTAAACCAGATTTCTATGAAGGGTTGCTGGCTCTGGGGCAGCAACAATTTGAAATGGCTAAGCTTCATTGGTCTTTTGCACTTGCCAACAAGATAGATCTATCAGGCTGGGATCCAACAGAGACAATTCAACTTTTTGACAGTGCAGAGGAGAAGATGAAAGCTGCAACTGTTATGTGGGAGACTCTGGAAGAGCAGAGGACAAAAGAGCTGCAGGACCCGAATACAAGCAAGAAAGAAGAACTATCGAGAAGAAGAAAAAAACAGGGAGGTCCCACTGAAGGTGAGTCGTCCATTGTTGGTCAGGGTGATATATCCGCAAAAGAAGCTGCTGAGCAAGCAGCCGTCATGAGGTCGCAGATTCACCTTTTCTGGGGTAATATGCTATACGAACGATCCCAAGTTGAATGCAAATTAGGAATGGGTGACTGGAATAAAAATCTGGAGGCTGCAGTCGAGCGCTTTAAGCTTGCAGGAGCGTCTGAGGCTGACGTCTCAATGGTACTTAAGAATCATCACTCCAACGTAGATGCAAAGGAAGGAGAAGTAAAAGGATCGAAAAGTCACAACCCAATTACACTGGCAAAATAG 2265 0.4547 MGKSGGRRKKGSASNSNKVSVDNSVAPIANGDVELDSSIFLKRAHELKEEGNRRFQNKDFVGALQQYENALKLTPKTHPDRAVFHSNKAACLMQMKPIDYETVIAECTMALQVQPQFVRALLRRARAFEALGKYGMAMLDVQVLLGVEPNHGDTLEIAQRLRTTLGTRQEAQQDLHSRPSPAALGASAVRGAPFAGLGPSLPARPGPKKGASAAVGSVVSPNYKTENPQVVLSAENGLENKSQLPKIVLKPSNGSASSSNSRKGNQKEHRQHSEVLVRWRPLKLVYDHDIRLAEMPVNCSFRVLRELVTKRFPSSKSVLIKYKDNDGDLVTITSMDELRLAECSVDSHLTREPEADKSDSVGMLRLNIVEVSPEQEPPLLDEEEEKPVESEGLKGDESESHSPSESVSEAPVAEADKIDKDAPKEKPGNTEDTECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMEFCSEALEEIVSGEEAQDLFDNAASKFQEVAALALFNWGNVYMCAARKRIPLDESAGEEIVAERTQVTYDWVKEKYSLARERYEQALVIKPDFYEGLLALGQQQFEMAKLHWSFALANKIDLSGWDPTETIQLFDSAEEKMKAATVMWETLEEQRTKELQDPNTSKKEELSRRRKKQGGPTEGESSIVGQGDISAKEAAEQAAVMRSQIHLFWGNMLYERSQVECKLGMGDWNKNLEAAVERFKLAGASEADVSMVLKNHHSNVDAKEGEVKGSKSHNPITLAK 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0396 754 CDD PB1 282 341 - -
Lal11g0396 754 PANTHER - 1 746 - -
Lal11g0396 754 MobiDBLite consensus disorder prediction 1 20 - -
Lal11g0396 754 MobiDBLite consensus disorder prediction 412 434 - -
Lal11g0396 754 Gene3D - 281 350 - -
Lal11g0396 754 MobiDBLite consensus disorder prediction 242 273 - -
Lal11g0396 754 ProSiteProfiles TPR repeat profile. 44 77 IPR019734 GO:0005515
Lal11g0396 754 MobiDBLite consensus disorder prediction 371 435 - -
Lal11g0396 754 Pfam PB1 domain 279 369 IPR000270 GO:0005515
Lal11g0396 754 PANTHER PROTEIN CLMP1 1 746 IPR044517 -
Lal11g0396 754 ProSiteProfiles PB1 domain profile. 279 371 IPR000270 GO:0005515
Lal11g0396 754 SMART PB1_new 279 371 IPR000270 GO:0005515
Lal11g0396 754 Gene3D Tetratricopeptide repeat domain 41 173 IPR011990 GO:0005515
Lal11g0396 754 SUPERFAMILY TPR-like 484 580 IPR011990 GO:0005515
Lal11g0396 754 MobiDBLite consensus disorder prediction 735 754 - -
Lal11g0396 754 MobiDBLite consensus disorder prediction 242 262 - -
Lal11g0396 754 SUPERFAMILY CAD & PB1 domains 277 342 - -
Lal11g0396 754 SMART tpr_5 44 77 IPR019734 GO:0005515
Lal11g0396 754 SMART tpr_5 82 117 IPR019734 GO:0005515
Lal11g0396 754 SMART tpr_5 118 151 IPR019734 GO:0005515
Lal11g0396 754 MobiDBLite consensus disorder prediction 623 650 - -
Lal11g0396 754 MobiDBLite consensus disorder prediction 387 403 - -
Lal11g0396 754 MobiDBLite consensus disorder prediction 623 662 - -
Lal11g0396 754 SUPERFAMILY TPR-like 41 175 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0396 Lal-Chr11 2922510 2924774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0396 41 165 Calmodulin-binding Proteins AT3G25230 27.941 4.25e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0396 - - gmx:100786963 1069.3