Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0380 ATGGTTTCCTTAGAAGAGTCTCGGTCCAATTCGACCGGGTTTTCCTTGAACCGGAATCACCACTTTCATTCTTCTAAAACGCAACGTTTCATAGGGAAATCGATGCGAACAATACGCTCCAATTTCTTCCAACATCAAAACCACATCAATAGTTCTACCTTAACGGAAAATCTCTCCGACACCGCCGTTGACCACCGTCTCGGCGAAATTGCCTCTCGGAACACCACATCTGTTAAGTTTTCTGTTGCCTCCGATGAGGAATTCATCGATCTCTCTCACGCATTTAGTGATTTCTCCGCTTGCAGCAGTGATATCTCCGGTGAGCTCCAGAAGCTTGCGTGTTTTCCGTCGCCGGAGTATGTCAACAAGAGCGAACCGAAGCCAGAGCCGGAGCCTTGCATGGGGTTTCTTCAGAGGAAGAATTTCTCGACGGAGATTATCGAGAGTATTTCGCCGGAGGATCTTCAACCGACAGTGAAGATGTGCGTCGACGGCCTACAGTCGCCATCGGTCGCCGTGAAACGATCGGCGGCGGCGAAACTGAGACTACTAGCGAAGAATCGCGCCGATAACCGAGTTCTGATCGCTGAGTCCGGTGCGGTTCCTGCTTTGGTTCCATTACTCCGATGCAGTGATCCGTGGACTCAAGAACACGCCGTAACGGCGTTGCTGAATCTATCTCTTCATGAAGATAACAAGATTTTGATAACAAACGCTGGAGCAGTGAAATCGCTGATTTATGTTCTCAAAACAGGTACTGAAGCTTCAAAGCAAAACGCTGCGTGCGCTTTATTAAGCCTCGCGTTAGTAGAAGAAAACAAAGCTTCAATCGGAGCTTCAGGAGCGATACCACCGCTGGTTTCTCTCTTATTGAACGGTTCGAATCGGGGAAAGAAGGACGCACTGACAACGCTATATAAATTATGTTCAGTGAAGCAGAACAAGGAGAGGGCGGTGAGTGCCGGAGCAGTGAAGCCGCTGGTGGAGTTGGTGGTGGAGGAGGGGAGTGGCATGACGGAGAAGGCAATGGTGGTGCTTAATAGTGTGGCGGCGATTGAGGAAGGGAAAGAAGCGATTGTGGAAGAAGGAGGGATTGGTGTTCTTGTAGAAGTGATTGAAGAAGGGTCTATGAAGGGAAAAGAGTTTGCTGTTTTCACACTTTTGCAGCTGTGTGGTGATAGTGTGAAGAACAGAGGGTTGCTTGTTAGGGAAGGTGGGATTCCTCCTCTTGTTGCTCTTTCTCAAAATGGGACTGCTAGAGCTAAGAACAAGGCTGAACAACTCCTTCGATATTTAAGAGAATCAAGACAAGAACCAACAACTTCAACTTCTTAG 1335 0.4831 MVSLEESRSNSTGFSLNRNHHFHSSKTQRFIGKSMRTIRSNFFQHQNHINSSTLTENLSDTAVDHRLGEIASRNTTSVKFSVASDEEFIDLSHAFSDFSACSSDISGELQKLACFPSPEYVNKSEPKPEPEPCMGFLQRKNFSTEIIESISPEDLQPTVKMCVDGLQSPSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPALVPLLRCSDPWTQEHAVTALLNLSLHEDNKILITNAGAVKSLIYVLKTGTEASKQNAACALLSLALVEENKASIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGAVKPLVELVVEEGSGMTEKAMVVLNSVAAIEEGKEAIVEEGGIGVLVEVIEEGSMKGKEFAVFTLLQLCGDSVKNRGLLVREGGIPPLVALSQNGTARAKNKAEQLLRYLRESRQEPTTSTS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0380 444 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 281 323 IPR000225 GO:0005515
Lal11g0380 444 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 199 241 IPR000225 GO:0005515
Lal11g0380 444 SUPERFAMILY ARM repeat 156 432 IPR016024 -
Lal11g0380 444 PANTHER U BOX DOMAIN-CONTAINING 7 441 - -
Lal11g0380 444 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 7 441 - -
Lal11g0380 444 SMART arm_5 311 351 IPR000225 GO:0005515
Lal11g0380 444 SMART arm_5 270 310 IPR000225 GO:0005515
Lal11g0380 444 SMART arm_5 352 392 IPR000225 GO:0005515
Lal11g0380 444 SMART arm_5 394 434 IPR000225 GO:0005515
Lal11g0380 444 SMART arm_5 229 269 IPR000225 GO:0005515
Lal11g0380 444 SMART arm_5 188 228 IPR000225 GO:0005515
Lal11g0380 444 Gene3D - 300 438 IPR011989 -
Lal11g0380 444 Gene3D - 139 299 IPR011989 -
Lal11g0380 444 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Lal11g0380 444 Coils Coil 418 438 - -
Lal11g0380 444 Pfam Armadillo/beta-catenin-like repeat 272 310 IPR000225 GO:0005515
Lal11g0380 444 Pfam Armadillo/beta-catenin-like repeat 190 227 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0380 Lal-Chr11 2791477 2797866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0380 154 437 U-box Gene Family AT2G23140 50.352 3.18e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0380 - - gmx:100818658 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1523 5 17790875 17794087 Lal11g0380 11 2791477 2797866 LSH