Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0379 ATGGAAATGGACCCTGGCAAACTTTTCATTGGAGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACAATATTTCCAGAATTTTGGAGATGTAGTGGAAGCTGTTATAATGAAGGATCGGACCACAGGACGCGCACGTGGTTTCGGGTTTATTGTTTTTGCCGATCCTTTTGTTGCTGAGCGAGTTGTTATGGAAAAACATGTCATAGATGGAAGAACCGTTGAAGCAAAAAAGGCTGTCCCTAGAGATGATCAGAATGTTCTGAACAGAAGCAACAGCAGCAGTCATGGGTCTCCCTGTCCTACTCCTACCCGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCTACAGTTACCGAGAGTGACTTTAAGAAGTACTTTGATCAGTTTGGAACAATTACAGATGTTGTCGTGATGTATGACCATAACACTCAAAGGCCAAGAGGTTTTGGATTCATCACCTTTGATTCTGAGGATGGAGTTGAGAAGGTGCTCTACAAAACTTTTCATGAATTGCATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATTATCTCCAAGTCCAAGTAGAGCTCAGTTAGGTGGACATAACTATGGTCTAAGTAGAGTTAGTAGCTTTGCTAATGGTTTTGTTCCGGGATATAATCCAAGTCTGGTTGGAGGGAATGGACTTAGAATAGACGACAGATTGAACCCTGTTACTATTGGTCGCAGTGGATATCCTCTTATGAGTCCTACTTATGGGTCAGGACTCAACCTTGAGCCACCATTGAGCCAACTTCTCTTAGGACGGGCATTGAACCCTTCATATAGTGGGAGTCCGAGCAGGTACGGTAATACCATAGGGTATGCTGGTACAAGTGCAGACAATAATTCAACCATAAGTTCAGCAAATCAGAATTTGTGGGGGAATGGGAATCTTAACTTTGCTACTAACCCTAGAAGCTCTGATTCCTTTGCTGGATATGGAAGCGAAAATTCAAACATGGGTTCTTTTGGTCGAATTGGACCACTTTGGAATTCTTCCCTTGGTATTGATCAAGCTGGAACTATTGGCTCTGGATATGGTAAGAGCAGTCTTAGTTATAGCTCTGGAGATGTGTTTTTAGGGTCAAAAGCAGTAGGTTATGGAAAAAGTCGGGAAAACATTGCTGCACCGGCTTCATCATATGCTGCTCTATCAAACGGAAGTTATGATGATGCATACAATTACAAAGATACTTATGAAACCGCTGGGTCATTCTATGGAGACCATACTTGGGGATCATCACCTACAGAACTAGCGGATGCTGGTTTTCTTGATTTTGGCCTTGGAAATGCTGTTTCTGATTTGATGAGCAAAAGTTCCGGTGGCCACATTGAGGCTTATGCTGTTGCCAATACACAACCAGATAGAGGTATTGCTGCCTAG 1422 0.429 MEMDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFADPFVAERVVMEKHVIDGRTVEAKKAVPRDDQNVLNRSNSSSHGSPCPTPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEDGVEKVLYKTFHELHGKMVEVKRAVPKELSPSPSRAQLGGHNYGLSRVSSFANGFVPGYNPSLVGGNGLRIDDRLNPVTIGRSGYPLMSPTYGSGLNLEPPLSQLLLGRALNPSYSGSPSRYGNTIGYAGTSADNNSTISSANQNLWGNGNLNFATNPRSSDSFAGYGSENSNMGSFGRIGPLWNSSLGIDQAGTIGSGYGKSSLSYSSGDVFLGSKAVGYGKSRENIAAPASSYAALSNGSYDDAYNYKDTYETAGSFYGDHTWGSSPTELADAGFLDFGLGNAVSDLMSKSSGGHIEAYAVANTQPDRGIAA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0379 473 MobiDBLite consensus disorder prediction 86 103 - -
Lal11g0379 473 Gene3D - 5 88 IPR012677 -
Lal11g0379 473 SUPERFAMILY RNA-binding domain, RBD 4 98 IPR035979 GO:0003676
Lal11g0379 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Lal11g0379 473 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 473 - -
Lal11g0379 473 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal11g0379 473 SMART rrm1_1 109 181 IPR000504 GO:0003723
Lal11g0379 473 Gene3D - 105 194 IPR012677 -
Lal11g0379 473 MobiDBLite consensus disorder prediction 81 104 - -
Lal11g0379 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal11g0379 473 SUPERFAMILY RNA-binding domain, RBD 104 204 IPR035979 GO:0003676
Lal11g0379 473 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lal11g0379 473 CDD RRM2_DAZAP1 106 185 IPR034131 GO:0003723
Lal11g0379 473 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 473 - -
Lal11g0379 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 167 IPR000504 GO:0003723
Lal11g0379 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0379 Lal-Chr11 2789765 2793906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0379 8 220 Eukaryotic Initiation Factors Gene Family AT2G36660 30.180 4.25e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0379 K14411 - pvy:116115801 595.89