Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0347 ATGTTTCCAAGAATGATACACCCCATTGATGGGCTCGTTGAAGATGTTCAAAGTGGTGGTGGTTCTAATCTCCCTCATAATCATAAGGGAGATCCATGTCTAGTTCTCACTGCTGATCCAAAACCTCGTCTTCGTTGGACTCAAGACCTTCATGAAAGGTTCGTTGATGCAGTTACTCAGCTTGGAGGTGCTAGTAAAGCTACACCAAAAGCGATCTTGAGGACCATGAATGTCAAGGGTCTGACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGACTTGGCAAGCAATCAGGAAAAGATATCAGCGAGGCATGCAAAGATGGAATGTCAGGCTCATATCTTTTAGAAAGTCCTGGTAATGACAACTCTCCTCCAAATTTGCCAGCTTCTGATACAAACGAGGGTTATGAAATCAAGGAGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAACTACATTTGCAAGTGGAGGCAGAGAAACACGTGCAAATTCGCCAGGATGCAGAGCGGAGATACATGGCCATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATAGGTGCTACTGTTATAGACACAGATAGCCAAAAGTTTCAAGGAATTGGAAGTAAAGCACCAAGAGGTCCCATGGTTGATGCTCTCGGCTTTTACTCCATGTCATCTTCTGAGGTGGTCGGAGTGCACCTCCCGGAAGAAGAAATAGCACCGAGTCTTCCACTCCAACGGGGTGATTGTTCAACCGAAAGTAGCCTAACTTCACATGAGACTTCCGGAGGAATAGGTTTCGAAGGAACTCCAGGTGGTGGAAAAATAAGAATGTTGGGGATGGAGTCTATGGCAGCACCTTTGATATGGAGTGAAGCTAAGATGAGAAGTCAAGCCATCAATGTAACACAAGGTAATAATCCTCATGGAATGACTAGGAACTATGAAAAGAGGTGTTATGTGCACTTATCCCATGTTGTCAATCTACACTTATCCCACGTTGTAAATTCAAACTACTATGTGATTTGA 1026 0.4347 MFPRMIHPIDGLVEDVQSGGGSNLPHNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAILRTMNVKGLTLFHLKSHLQKYRLGKQSGKDISEACKDGMSGSYLLESPGNDNSPPNLPASDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHVQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIGSKAPRGPMVDALGFYSMSSSEVVGVHLPEEEIAPSLPLQRGDCSTESSLTSHETSGGIGFEGTPGGGKIRMLGMESMAAPLIWSEAKMRSQAINVTQGNNPHGMTRNYEKRCYVHLSHVVNLHLSHVVNSNYYVI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0347 341 Pfam MYB-CC type transfactor, LHEQLE motif 139 184 IPR025756 -
Lal11g0347 341 Gene3D - 40 98 - -
Lal11g0347 341 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
Lal11g0347 341 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 312 - -
Lal11g0347 341 SUPERFAMILY Homeodomain-like 41 97 IPR009057 -
Lal11g0347 341 MobiDBLite consensus disorder prediction 114 134 - -
Lal11g0347 341 MobiDBLite consensus disorder prediction 245 268 - -
Lal11g0347 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Lal11g0347 341 MobiDBLite consensus disorder prediction 246 263 - -
Lal11g0347 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 312 IPR044848 GO:0003700
Lal11g0347 341 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Lal11g0347 341 MobiDBLite consensus disorder prediction 117 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0347 Lal-Chr11 2539950 2545134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0347 21 257 G2-like Transcription Factor Family AT3G24120 45.749 1.06e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal11g0347 Myb_DNA-binding 4.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0347 - - lang:109329801 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1553 5 18122729 18126295 Lal11g0347 11 2539950 2545134 LSH
Lal3g0207 3 1372186 1384256 Lal11g0347 11 2539950 2545134 LSH