Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0338 ATGCAATTAGGGTTCTTCGAAATGGTTGGCAATGGCAATTGCAATGGAAACATGGCATACGACATAATGATAAACATTCTGAAAAGGCTTCCAGTGAAATCCTTGTTCCGATTCAAATGTGTATCCAAAGATTGGTTCAACCTATTCAATTCCCCTTATTTCATTTCACTACACCTTCAACACTCTACTCTCCTTCTTCTCTTCCAACGAATTCCCCTTTCCAACCTCAACCATTCTCAATCTTCTTCTTCCTCCTCTTCGTGTTTAATTGGACAAGATTTCAAAGTTCACAATCCTCAATTCATCGATTTCGCTGTAACAGATAAGGTTATTGGTTCCTGCAATGGTTTATTGTGCGTTAAACACACTAACAACAATCACATGCTCTCAATTTCGAACCCGGCAACTAGGGAAATCAGACAGGTACCAGAAATTCTACATGATATCAAGAGTTTTTACTATTTTGGATTTGGTTTTAGTCCAATTGCCAATGATTACAAGGTGGTTAGAATTTCTGTCCCCGATGAAGATAGGATTCTTGATCTTGATGACATTCGGGTTAGTCGAGCTGAAGTTTATTCATTAACCAGTGGTGCTTGGAGAGAAATTGATGCTACCATCTTGCAAACGTTGTATCTTATGTCTAACTCTGTAACTGTCAATGGAGTTATGTTTTGGCAGGCCTTTGCTACTGATCCTGATGCTGAATTTGTGGTTTCATTTGACATAAGTAGCGAGATGTTTACACTGTTAAAAGGTCCTCCATCTCCACCTTCAACTTTACTCACTCATTCTCATACCAATGTACTTGCAGTACATAACAATAAACTTGCTATGTTTCATTACTTCATAAACGGAAGCTTTGAATCCTCGTCCATTGAATTGTGGGTACTGGAAGCTGAGAGGTGGGTTAAGCAGTATAGTGTAGGACCTTTTTCAAGGATACTGTATCCGTTGAGTATCTGGGGAGATGAAATTGTCTGCCGTGAAGAATTGCATGGGCGCGTTGACGAATACAGCAAAGTGGAAACTGTTCTATCTCTTTTCAATCCATATAGTAATGAGCTGAAGAAACTGCCAGCCCAAAGAGATAAGTATTATTATGTTTCTTTCAATTATGCAGAGAGCGTTGTCCCAGTTGCCAACGTTCACCATGAACAAGAGTAA 1167 0.3925 MQLGFFEMVGNGNCNGNMAYDIMINILKRLPVKSLFRFKCVSKDWFNLFNSPYFISLHLQHSTLLLLFQRIPLSNLNHSQSSSSSSSCLIGQDFKVHNPQFIDFAVTDKVIGSCNGLLCVKHTNNNHMLSISNPATREIRQVPEILHDIKSFYYFGFGFSPIANDYKVVRISVPDEDRILDLDDIRVSRAEVYSLTSGAWREIDATILQTLYLMSNSVTVNGVMFWQAFATDPDAEFVVSFDISSEMFTLLKGPPSPPSTLLTHSHTNVLAVHNNKLAMFHYFINGSFESSSIELWVLEAERWVKQYSVGPFSRILYPLSIWGDEIVCREELHGRVDEYSKVETVLSLFNPYSNELKKLPAQRDKYYYVSFNYAESVVPVANVHHEQE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0338 388 PANTHER BNAA05G37150D PROTEIN-RELATED 17 320 - -
Lal11g0338 388 SUPERFAMILY F-box domain 20 72 IPR036047 GO:0005515
Lal11g0338 388 Gene3D - 17 54 - -
Lal11g0338 388 SMART fbox_2 18 58 IPR001810 GO:0005515
Lal11g0338 388 Pfam F-box domain 21 53 IPR001810 GO:0005515
Lal11g0338 388 PANTHER BNAA05G37150D PROTEIN 17 320 - -
Lal11g0338 388 TIGRFAM F_box_assoc_1: F-box protein interaction domain 112 311 IPR017451 -
Lal11g0338 388 Pfam F-box associated domain 218 309 IPR013187 -
Lal11g0338 388 SUPERFAMILY Galactose oxidase, central domain 126 323 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0338 Lal-Chr11 2480778 2485133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0338 191 297 Carbohydrate Esterase AT1G25141 27.523 6.48e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0338 - - gmx:102669119 379.407