Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0302 ATGGGTGCTCCTAAGCAGAAATGGACAGCAGAAGAAGAAGCAGCATTGAAAGCTGGAGTGGTTAAGCATGGGGTTGGTAAATGGCGTACAATACTTAAGGATCCAGAGTTTAGTGGTGTCTTATATCTGCGGTCAAATGTCGATCTCAAGGATAAATGGAGAAATTTGAGTGTGATGGCAAATGGATGGACCTCCAGGGAGAAGTCTAGATTAGCAGTCAAAAGGGTGTATCAGACCCCAAGACAGGATGAGAACTTCATGGCTATCGGTCCTGTAGTTCCGAGTGATGAAGAAATTGCCGATGATAAGCCTCTTCAAGTTTCTAAAGATACGATGCACCTTCCTGGTCCAAAAAGATTGGATAACCTTATAATGGAAGCAATAACTACCTTGAAGGAGAATGGTGGTTCTAATAAGACAACTATCGCCTCTTTCATAGAGGATCAATATTGGGCACCACCAGACTTCAAAAGGTTGTTGTCGTCGAAGTTAAAGTTTTTGACAGCAATGGGAAAACTGATCAAGGCAAAACGCAGGTATAGGATTGCACCTATTCCAGCATATTCTGACCGAAGAAGAAACTCACCGATGTTATTATTGGATGGGAGGCAGAAAACCACTATGAAAGTTGACAGGAATGAGATCAATGTCCTGACAAAGTCTCAGATAGATTTAGAGTTAGCAAAAATAAGGTCCATGACTCCGCAAGAGGCAGCTGTAGTTGCTGCTCGAGCAGTTTCTGAAGCGGAAGCTGCCATAGCAGAAGCTGAAGAGGCAACTAGGGAGGCAGAGGCGGCAGAAGCTGATGCAGAGGCAGCAGAAGCTTTTGCAGAAGCTGCAATGAAAGCGAGAAACACCCCGAAGATGGTAAAAAGCTAA 879 0.4414 MGAPKQKWTAEEEAALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWTSREKSRLAVKRVYQTPRQDENFMAIGPVVPSDEEIADDKPLQVSKDTMHLPGPKRLDNLIMEAITTLKENGGSNKTTIASFIEDQYWAPPDFKRLLSSKLKFLTAMGKLIKAKRRYRIAPIPAYSDRRRNSPMLLLDGRQKTTMKVDRNEINVLTKSQIDLELAKIRSMTPQEAAVVAARAVSEAEAAIAEAEEATREAEAAEADAEAAEAFAEAAMKARNTPKMVKS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0302 292 SUPERFAMILY "Winged helix" DNA-binding domain 119 193 IPR036390 -
Lal11g0302 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Lal11g0302 292 SMART h15plus2 113 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal11g0302 292 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lal11g0302 292 SMART sant 4 59 IPR001005 -
Lal11g0302 292 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lal11g0302 292 Pfam linker histone H1 and H5 family 120 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal11g0302 292 Gene3D - 2 59 - -
Lal11g0302 292 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Lal11g0302 292 PANTHER SINGLE MYB HISTONE 4 1 285 IPR044597 GO:0003691
Lal11g0302 292 Coils Coil 239 276 - -
Lal11g0302 292 Gene3D - 117 192 IPR036388 -
Lal11g0302 292 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal11g0302 292 CDD SANT_TRF 6 56 - -
Lal11g0302 292 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0302 Lal-Chr11 2157116 2161535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0302 1 233 Single Myb Histone (SMH) Gene Family AT1G49950 62.963 6.32e-101 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal11g0302 Linker_histone 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0302 K09422 - gmx:100780698 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0160 3 1061889 1065820 Lal11g0302 11 2157116 2161535 LSH