Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0299 ATGTGTAGCATCTTTGTCCAAATCATGGAGAGTTATCAAGGTGATTTAACTGATATTGTTCGTGCTAGTAGTGGTGGAGCATATAGCAACATGGTAAGAAGCACTACAACTTCTTCATCATCACAAGCTGCAACAAATAATCACTTTTCTCATCATCATTATTGGCAGCAACACTTTTCTTCTGATCCTATTAATTTCTCTTCTATTATGGAAGGAGGTACCAACTTTGGTGATCCATTCTCAAACATGAGAGATCCTATCTTATATGAGCTTGATATTATGCCTAGTTCATGGAGTAATTCTTCAACCTACTTCAACAACAACACCACAACAACAACAACATCTTCATCTGCTGAAATTATAAGCACTTCTTGTGGGGCTTTGGAAGATGCAGCACCTTTTTTTGGTGCTAATACTAATACCTCTAGTGCTATTTTTGGACACAAGATTCTTGAAGATGACAGCATCATGAGATCATCAAGGCCTAATACTAAGAACATATTCTCAAACATGATTCAGATCTCTCCCAATGCTGCAAAGTACAATTCTACTTCTCCGGTCATGGAAGCTTCTCCAAGAGCAATTCACCCTTCTTCTGTGGTTTCAAGCAACATGATTAATGCAACAAATGCCTCCAAGGATTGTCTTGTTAACAACACAGGAGTAGTTCAGATCTCATCTCCACGGAATCCGGGTCTTAAGAGAAGGAAGAATCAGGCAAAAAAAGTGGTTTGTATTCCTGCACCAGCAGCTGCAAATAGTAGACAAACTGGAGAAGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCAAGGGGCTATTATAGATGCAGTAGCTTAAAGGGTTGTTCTGCAAGGAAACAAGTTGAGAGGAGTAGGACTGACCCAAACATGTTGGTTATTACTTACACTTCTGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTAGCTGGTTCATCAAGATCTCAACCACCCAAGAACACCAACAATATTGCTTCAACTTCAAAGAACTCAGAAACCTCTCACAAAGGCATAACAATAACAAAGCCAAAGGAAGAGCAACAAGAGAGCAAGAACAGTGAAGGGAATGTGTCTTTGAAGGAAGAGATAGAAATGAAAGACATAGAGAAACAGCTTGAGATGGATGATGGAGAATTAAGTGATGGAATCTCTTACAAGCCATGCATGTTACAAAATATTACTAGCCATAATAATAGTAATCAATCTCATGAGGATTTCTTTGCAGAATTGGGTGAAATAGAAGCTGATGATCCACTAAACCTATTGTTTACTCAAGGTTTTAATGATCAGAAGGAATCCAAGGCCTTAGATCCATTCCATCTCTTTGACTGGTTAGGAAGAGGCACCAACAACAACATCAATGACTCATTTGAAGAACCAAATAGTAAGAGAAGGTTATAA 1461 0.3881 MCSIFVQIMESYQGDLTDIVRASSGGAYSNMVRSTTTSSSSQAATNNHFSHHHYWQQHFSSDPINFSSIMEGGTNFGDPFSNMRDPILYELDIMPSSWSNSSTYFNNNTTTTTTSSSAEIISTSCGALEDAAPFFGANTNTSSAIFGHKILEDDSIMRSSRPNTKNIFSNMIQISPNAAKYNSTSPVMEASPRAIHPSSVVSSNMINATNASKDCLVNNTGVVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSLKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQPPKNTNNIASTSKNSETSHKGITITKPKEEQQESKNSEGNVSLKEEIEMKDIEKQLEMDDGELSDGISYKPCMLQNITSHNNSNQSHEDFFAELGEIEADDPLNLLFTQGFNDQKESKALDPFHLFDWLGRGTNNNINDSFEEPNSKRRL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0299 486 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 13 466 - -
Lal11g0299 486 MobiDBLite consensus disorder prediction 314 382 - -
Lal11g0299 486 MobiDBLite consensus disorder prediction 358 382 - -
Lal11g0299 486 Pfam WRKY DNA -binding domain 264 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal11g0299 486 SUPERFAMILY WRKY DNA-binding domain 260 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal11g0299 486 SMART WRKY_cls 262 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal11g0299 486 MobiDBLite consensus disorder prediction 314 357 - -
Lal11g0299 486 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 466 IPR044810 GO:0003700
Lal11g0299 486 Gene3D WRKY domain 236 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal11g0299 486 ProSiteProfiles WRKY domain profile. 257 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0299 Lal-Chr11 2135181 2138794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0299 1 442 WRKY Transcription Factor Family AT2G34830 42.549 2.06e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal11g0299 WRKY 8.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0299 - - aprc:113852911 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1626 5 18648976 18653429 Lal11g0299 11 2135181 2138794 LSH
Lal3g0158 3 1041560 1046117 Lal11g0299 11 2135181 2138794 LSH