Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0278 ATGAGTCGTTTCACGAAATGTTGGCACCCGGGTATGAATGATGAAGCTTCTTCTTCATCTTCTTCTGGTGCTGGCGTTCTCTGCAAAGATGGTTTGCTATGGTACCGCGATATTGGAAGACATGCTTTCGGTGATTTCTCAATGGCTGATGTTCAAGCTAATCGTGTTCTTGAAGACCAGAGCCAGATCGAGTCTGGTCCATTAGGCACTTATGTCGGCATCTACGACGGCCACGGTGGCCCTGACGCTGCACGATACGTCTGCGATTACTTGTTCCGTAACTTCCAAGCATTAACTATTCAATCAGGGGGAAATGTGACAGAGGAGACTATTCAAACGGCGTTCCGTCGAACTGAAGAGGGGTTCACTGCTCTTGTTTCAGAACAGTGGAATACACTGCCTGATCTTGCGACTACTGGAACTTGTTGTCTGGTTGGGGTGATTTTGCAGCAGACCCTCTTTGTGGCAAGTCTTGGAGATTCTCGTCTCGTGTTGGGCACGAGAGATGTCAACACTGGTAGGATTACTGCAGTTCAGTTGTCTACAGAACACAATGCAAATGTTGTGGCCATTAGACAGGAACTTGCGGAGTTACACCCGGACGACCCCGAGATTGTTGTTTTCAGACAGGATATCTGGAGAGTAAAAGGCATCATTCAGGTTTCTAGATCTATAGGTGACGTGTATTTGAAAGATGGACGGTTTAATCGGGCACCAATTAAACAAAAATTCAGACTTCCGCAACCAATGAACAAGCCTATCTTGTCTGCTAGTCCAACTATTATTTCTCATCATCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCTACTGAGTAATGAAAGAGCAGTGGATATTGTTCACAGCAATCCACATGCAGGTAGTGCCAGGAGACTTGTGAAGGCAGCACTACATGAAGCAGCTAGAAGACGTGAACTGCGACCCCCAGAAAATAATAATAATAATAATGTTAACAAGAAGGATAGTGCCAAGAAACTTGTGAAGACTGTCCTACAGGGAAAACGTAAGGTGCAATATACAGAGCTCCATAAGATAGAGAAGGACGCTCGGCGCGAGTTTCACGATGATATTTCGGTTATCGTTTTATTCTTAAACCCTGATCGTATATCAAAAGGTCCAGCTTTAAATCAACCAATACTCTCAGTTCGAAGTGCTCTGGATCACTGA 1206 0.4461 MSRFTKCWHPGMNDEASSSSSSGAGVLCKDGLLWYRDIGRHAFGDFSMADVQANRVLEDQSQIESGPLGTYVGIYDGHGGPDAARYVCDYLFRNFQALTIQSGGNVTEETIQTAFRRTEEGFTALVSEQWNTLPDLATTGTCCLVGVILQQTLFVASLGDSRLVLGTRDVNTGRITAVQLSTEHNANVVAIRQELAELHPDDPEIVVFRQDIWRVKGIIQVSRSIGDVYLKDGRFNRAPIKQKFRLPQPMNKPILSASPTIISHHLQPNDSFLIFASDGLWELLSNERAVDIVHSNPHAGSARRLVKAALHEAARRRELRPPENNNNNNVNKKDSAKKLVKTVLQGKRKVQYTELHKIEKDARREFHDDISVIVLFLNPDRISKGPALNQPILSVRSALDH 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0278 401 MobiDBLite consensus disorder prediction 315 337 - -
Lal11g0278 401 Gene3D - 36 384 IPR036457 -
Lal11g0278 401 PANTHER ALPHABET, ISOFORM E-RELATED 330 401 - -
Lal11g0278 401 PANTHER ALPHABET, ISOFORM E-RELATED 4 323 - -
Lal11g0278 401 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Lal11g0278 401 SMART PP2C_4 35 375 IPR001932 -
Lal11g0278 401 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 330 401 - -
Lal11g0278 401 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 4 323 - -
Lal11g0278 401 CDD PP2Cc 46 317 IPR001932 -
Lal11g0278 401 SUPERFAMILY PP2C-like 49 378 IPR036457 -
Lal11g0278 401 Pfam Protein phosphatase 2C 69 315 IPR001932 -
Lal11g0278 401 ProSiteProfiles PPM-type phosphatase domain profile. 45 377 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0278 Lal-Chr11 1967881 1971086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0278 32 303 PP2C-type Phosphatase Gene Family AT3G17090 66.176 3.24e-136 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0278 K01102 - gmx:100814799 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1653 5 18827837 18833377 Lal11g0278 11 1967881 1971086 LSH
Lal7g0978 7 16063402 16067710 Lal11g0278 11 1967881 1971086 PCT
Lal19g1132 19 14872676 14876840 Lal11g0278 11 1967881 1971086 PCT
Lal11g0278 11 1967881 1971086 Lal7g0978 7 16063402 16067710 PCT
Lal11g0278 11 1967881 1971086 Lal19g1132 19 14872676 14876840 PCT