Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0273 ATGAAGATGGGTTCTTCAGCAAAGAAAGAAGAACAAAATTCAACAATGAAACGAACTTCATCTAACCCTTCTCACTCCATAAGCAAAGCAATCGCTCAATACACCGAAGATGCTCGCCTCCACGCTGTTTTTGAACAATCCGGCGAGTCCTTCAACTACTCCAACTCCACCCGCCTCACCACCACCACCACCACCCACTTCTCCGATTCCCTCCCTGAACAACAGATCACCGCCTACCTCCTCAAGATTCAACGTGGTGGTACTATTCAACCCTTTGGATGCATGATCGCCGTTGATCAACCTTCTTTCCTTATCATTGGTTTTTCTGATAATGCCCGCGACATGCTTGGTTTAACTCCTCAATCAGTTCCTAGTCTTGACAGTCCTGAGACTTTGAATGTTGGCACTGATGTTCGAACTCTTTTCACTCACTCTAGTGCTGCTTTGTTAGAGAAAGCTTTTGGGGCGCGTGAGATCACGCTCCTTAACCCCATTTGGGTACATTCTAGAAGCTCTGGTAAGGCATTTTATGGTATATTGCATCGGATTGATGTTGGTGTTGTTATTGATTTGGAGCCTGCTAGGATTGAAGACCCTGCACTTTCCATTGTTGGGGCAGTGCAGAGTCAGAAGCTCGCCGTTCGTGCTATTTCGTTGTTGCAGTCACTCCCTGGGGGTGATGTTAAGCTTCTTTGTGATACTGTGGTTGAGAGTGTTAGGGAGTTAACTGGGTATGATAGAGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGTGAGGTCGTTGCTGAGAGTAAGAGGGCTGATTTGGAGCCTTATATTGGTTTGCATTACCCTGCTACCGATATACCACAGGCTTCGCGATTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTTCTCCTGTGAGGGTGGTACAGGATGAGGCTCTTGCGCAGCCCCTGTGTTTGGTTGGATCCACGCTTCGTGCACCTCATGGTTGTCATGCTCAGTATATGGCTAATATGGGCTCCATTGCTTCGTTGGCGATGGCGGTTATAATCAATGGGAATGATGAAGAAGGTGTTGCTGGTCGTAGCTCGATGAGGCTTTGGGGATTGGTCGTTTGCCATCATACATCTGCTAGGTGTATTCCTTTTCCTTTACGGTATGCTTGTGAGTTCCTGATGCAGGCCTTTGGGTTGCAATTGAATATGGAACTTCAATTGGCAGCGCAGTCGTTGGAGAAACGAGTTTTGAGGACGCAGACTCTTTTGTGTGACATGCTTCTCAGGGACTCTCCTACTGGAATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTGAAGTGTAATGGAGCAGCTCTCTATTACCAAAGAAATTATTATCCGTTAGGTGTTACCCCAACCGAGTCTCAGATAAAGGACATCATAGAGTGGTTGTTGGCCTTCCATGGAGATTCGACGGGTTTAAGCACTGATAGTCTGGCAGATGCTGGTTACCCTGGTGCTGCCTCGCTTGGGGACACAGTTTGTGGTATGGCGGTTGCTTATATCACAGAAAATGATTTTCTTTTCTGGTTCAGATCCCACACAGCAAAAGAGGTCAAATGGGGTGGTGCAAAGCATCACCCAGAGGATAAGGATGATGGGCAGAGAATGGATCCTCGTTCTTCATTTAAGGCATTTTTGGAAGTGGTAAAAAGTCGCAGTTTGCCATGGGAGAATGCAGAAATGGATGCAATTCACTCGTTGCAGCTTATTCTGCGAGACTCTTTTAGAGATGCCGAACATAGCAATTCTAAGGCTGTTGTACATGCCAATTTGTCAGATATAGAGTTGCAAGGGGTGGATGAACTGAGTTCCGTGGCTAGAGAAATGGTTAGATTGATAGAAACTGCCACTGCTCCCATATTTGCCGTTGATGTTGATGGCCGCATAAATGGGTGGAATGCAAAGGTTTCAGAATTGACAGGACTCCCAGTTGATGAGGCTATGGGGAAGTCCCTTGTACATGATCTAGTGTATAAGGAGTATGAAGAAACTGTAGACAGGCTTCTTTCTCATGCTTTAAGAGGTGAAGAAGATAAGAATGTCGAGATAAAAATGAAGATGTTTGGCCCTGACCATCAAGATAAGGCAGTTTTTGTGGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTATGCTTTGTTGGTCAGGATGTTACAGGTCAAAAAATTGTAATGGACAAGTTCGTTAACATACAAGGTGACTACAAGGCTATTATACATAGCCCAAATCCATTAATCCCTCCCATTTTTGCATCTGATGATAACACATGTTGCTTAGAGTGGAACACTGCCATGGAAAAGCTTACTGGTTGGGGCCGTGCTGATGTCATTGGAAAAATGCTGGTAGGAGAGGTTTTTGGTAGTTGCTGCCCATTGAAAGGTTCAGATGCTATGACAAAGTTCATGATTGTCTTGCACAATGCTCTTGGTGGACAAGATACTGATAAATTCCCTTTTTCATTTCTCGACCGACATGGAAAATATGTGCAAGCTTTCGTGACTGCAAATAAGAGGGTTAACATGAATGGTCAGATCATTGGGGCTTTTTGCTTTCTGCAAATTGTGAGTCCTGAACTTCAACATGCTCTGAAAGTCCAGAAACAACAGGAGAAGAATTGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCTTTGAGTGGCATACGCTTTACAAACTCACTTTTGGAGGCCACGGTCTTGACTGATGAACAAAAGCAGCTTCTTGAGACAAGTGCTTCTTGTGAGAAGCAAATGTTAAAGATAATACGGGATGTTGATCTAGACACTATCGATGATGGGTCTTTGGAGCTTGAAAAGGGGGAATTCTTTCTTGGGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGCTAAGAGAAAGAAATTTACAGCTGATTCGTGATATTCCTGAAGAAATCAAAACACTGGCTCTTTATGGTGATCAATTGAGGATTCAACAAGTCTTAGCTGATTTCTTATTGAATATGGTGCGCTACGCTCCATCTCCAGATGGCTGGGTAGAGATTCATGTAAGTCCAAGAATAAAACAAATTTCTGATGGGCTGACTCTTCTCAATGCCGAATTTAGGATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAACTGATCCAAGATATGTTCCACGCCAATCGGTGGGTGACTCAAGAAGGGTTAGGGCTGAGCATGAGCAGAAAGATTCTAAAGTTAATGAACGGCGAAGTCCAATATATCAGGGAGGCAGAACGGTGCTACTTCTTGATTCTTCTTGAATTACCGGTGACGCGGCGAGGCTCTACAAGTATTAATTAG 3390 0.4383 MKMGSSAKKEEQNSTMKRTSSNPSHSISKAIAQYTEDARLHAVFEQSGESFNYSNSTRLTTTTTTHFSDSLPEQQITAYLLKIQRGGTIQPFGCMIAVDQPSFLIIGFSDNARDMLGLTPQSVPSLDSPETLNVGTDVRTLFTHSSAALLEKAFGAREITLLNPIWVHSRSSGKAFYGILHRIDVGVVIDLEPARIEDPALSIVGAVQSQKLAVRAISLLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDEALAQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEEGVAGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCNGAALYYQRNYYPLGVTPTESQIKDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDTVCGMAVAYITENDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMDPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEHSNSKAVVHANLSDIELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLPVDEAMGKSLVHDLVYKEYEETVDRLLSHALRGEEDKNVEIKMKMFGPDHQDKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKIVMDKFVNIQGDYKAIIHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRADVIGKMLVGEVFGSCCPLKGSDAMTKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQAFVTANKRVNMNGQIIGAFCFLQIVSPELQHALKVQKQQEKNCFARMKELAYICQEVKNPLSGIRFTNSLLEATVLTDEQKQLLETSASCEKQMLKIIRDVDLDTIDDGSLELEKGEFFLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLALYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVSPRIKQISDGLTLLNAEFRMVCPGEGLPPELIQDMFHANRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFLILLELPVTRRGSTSIN 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0273 1129 ProSiteProfiles PAS repeat profile. 620 691 IPR000014 -
Lal11g0273 1129 ProSiteProfiles PAS repeat profile. 754 806 IPR000014 -
Lal11g0273 1129 SUPERFAMILY GAF domain-like 207 402 - -
Lal11g0273 1129 CDD PAS 765 873 IPR000014 -
Lal11g0273 1129 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 970 1116 IPR036890 -
Lal11g0273 1129 Pfam His Kinase A (phospho-acceptor) domain 899 959 IPR003661 GO:0000155|GO:0007165
Lal11g0273 1129 Pfam GAF domain 228 405 IPR003018 GO:0005515
Lal11g0273 1129 Pfam PAS fold 78 194 IPR013654 GO:0006355
Lal11g0273 1129 CDD HATPase_Phy-like 1006 1118 IPR044767 -
Lal11g0273 1129 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1007 1113 IPR003594 -
Lal11g0273 1129 Gene3D PAS domain 82 330 - -
Lal11g0273 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 625 734 IPR035965 -
Lal11g0273 1129 Gene3D - 410 583 IPR043150 -
Lal11g0273 1129 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 887 951 IPR036097 GO:0000155|GO:0007165
Lal11g0273 1129 PANTHER PHYTOCHROME 9 1123 - -
Lal11g0273 1129 Pfam Phytochrome region 418 591 IPR013515 GO:0006355|GO:0009584
Lal11g0273 1129 MobiDBLite consensus disorder prediction 1 26 - -
Lal11g0273 1129 Gene3D - 878 957 - -
Lal11g0273 1129 SMART HKATPase_4 1007 1120 IPR003594 -
Lal11g0273 1129 SMART pas_2 753 823 IPR000014 -
Lal11g0273 1129 SMART pas_2 622 689 IPR000014 -
Lal11g0273 1129 Pfam PAS fold 754 873 IPR013767 GO:0006355
Lal11g0273 1129 Pfam PAS fold 623 738 IPR013767 GO:0006355
Lal11g0273 1129 ProSiteProfiles Histidine kinase domain profile. 902 1122 IPR005467 -
Lal11g0273 1129 ProSitePatterns Phytochrome chromophore attachment site signature. 327 336 IPR013516 -
Lal11g0273 1129 PANTHER TWO-COMPONENT HISTIDINE KINASE 9 1123 - -
Lal11g0273 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 768 871 IPR035965 -
Lal11g0273 1129 PRINTS Phytochrome signature 142 164 IPR001294 GO:0006355|GO:0009584
Lal11g0273 1129 PRINTS Phytochrome signature 242 261 IPR001294 GO:0006355|GO:0009584
Lal11g0273 1129 PRINTS Phytochrome signature 327 348 IPR001294 GO:0006355|GO:0009584
Lal11g0273 1129 PRINTS Phytochrome signature 435 455 IPR001294 GO:0006355|GO:0009584
Lal11g0273 1129 PRINTS Phytochrome signature 520 539 IPR001294 GO:0006355|GO:0009584
Lal11g0273 1129 PRINTS Phytochrome signature 553 571 IPR001294 GO:0006355|GO:0009584
Lal11g0273 1129 PRINTS Phytochrome signature 623 639 IPR001294 GO:0006355|GO:0009584
Lal11g0273 1129 PRINTS Phytochrome signature 642 657 IPR001294 GO:0006355|GO:0009584
Lal11g0273 1129 PRINTS Phytochrome signature 716 733 IPR001294 GO:0006355|GO:0009584
Lal11g0273 1129 PRINTS Phytochrome signature 736 756 IPR001294 GO:0006355|GO:0009584
Lal11g0273 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 83 194 IPR035965 -
Lal11g0273 1129 MobiDBLite consensus disorder prediction 1 15 - -
Lal11g0273 1129 SUPERFAMILY GAF domain-like 413 590 - -
Lal11g0273 1129 CDD PAS 631 738 IPR000014 -
Lal11g0273 1129 PIRSF Phytochrome_conventional 5 1127 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lal11g0273 1129 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 227 395 IPR016132 -
Lal11g0273 1129 TIGRFAM sensory_box: PAS domain S-box protein 627 742 IPR000014 -
Lal11g0273 1129 Gene3D - 958 1123 IPR036890 -
Lal11g0273 1129 Gene3D - 208 566 IPR029016 -
Lal11g0273 1129 SMART gaf_1 227 415 IPR003018 GO:0005515
Lal11g0273 1129 CDD HisKA 895 951 IPR003661 GO:0000155|GO:0007165
Lal11g0273 1129 Gene3D PAS domain 767 877 - -
Lal11g0273 1129 SMART HisKA_10 895 959 IPR003661 GO:0000155|GO:0007165
Lal11g0273 1129 Gene3D PAS domain 618 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0273 Lal-Chr11 1937484 1942455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0273 5 1120 Histidine Kinase Gene Family AT4G16250 73.703 0.0 1744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0273 K12121 - gmx:100799831 1964.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1657 5 18846174 18850934 Lal11g0273 11 1937484 1942455 LSH