Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0258 ATGGGGAGAGCACCTTGCTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTGACTGATTATATTCAAGAAAATGGTGAAGGATCATGGAGGTCCTTGCCTAAGAATGCAGGTTTGTTAAGATGTGGGAAGAGTTGCAGACTAAGATGGATAAACTATTTGAGAGCAGATGTTAAGAGAGGGAACATCACTCCTGAAGAGGAAGAACTCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCTGTGATAGCAGGACAATTAGAAGGAAGAACAGATAATGAGATAAAGAATTATTGGAACTCTCATTTGAGAAGAAAGATTTACTGCTTCATGAGATGTTTAAATAATGAGTCTATGCCACCCATTGATTTAGCTAATATAGCTTCTACATCCAAAAGAAGAGTTAAAGGGACAAAGAATCATGTTGAAGTAGCCATGGAAGAGGACCAAAACATGGCTTTGAACCAAAACTCTCATGAACCAATGCCTCAAAGGAATGCAACTGCACAAGTTTGTTTTAATGGAGGAGAACCTCATAAAGAAATTTCCATGATGGATATTTGTTATGAAATGGATCAAGCCAATGCTTATAATAATAATAATAATAGTAATAATATTGCATCATCATACCCTAATATGAATGTAGATATTGAAGGCTTGGGACCATACCAATGGTTAGATGATGAAATTATGAAACTTAGTCACATGTTTGAAAATGGGGTACTTGTAAATAATCCAAATGGGAATGGGAATGTGACCCTTAAGGAGGAGCCTAATGGAAATGACTCATATGGTCATATGCAAATGGATATAATGGGAACAAGTGAGGATAAAAAAAGTGGTAGTTTTTGGAACTCATCAAATGAAGAGAATGGAGGATGGTACAACACTAGTTGTTTATCAGTTAATTCTGTTAGTGATTATCAGTGGCCTAATTGGGATTTGACAGGTAATACTCAATCTCATAATCAGTGGGACCTTTGTGAACAAGACCAAAACCAATCTTGCTTGTGGAGTATTGGAATTGGTGAAGTAGATGGGTTTAATCATTGA 1080 0.3685 MGRAPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPEEEELIVKLHAVLGNRWSVIAGQLEGRTDNEIKNYWNSHLRRKIYCFMRCLNNESMPPIDLANIASTSKRRVKGTKNHVEVAMEEDQNMALNQNSHEPMPQRNATAQVCFNGGEPHKEISMMDICYEMDQANAYNNNNNSNNIASSYPNMNVDIEGLGPYQWLDDEIMKLSHMFENGVLVNNPNGNGNVTLKEEPNGNDSYGHMQMDIMGTSEDKKSGSFWNSSNEENGGWYNTSCLSVNSVSDYQWPNWDLTGNTQSHNQWDLCEQDQNQSCLWSIGIGEVDGFNH 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0258 359 PANTHER MYB TRANSCRIPTION FACTOR 2 319 - -
Lal11g0258 359 Gene3D - 13 66 - -
Lal11g0258 359 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 319 - -
Lal11g0258 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal11g0258 359 CDD SANT 16 61 IPR001005 -
Lal11g0258 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal11g0258 359 Gene3D - 71 116 - -
Lal11g0258 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal11g0258 359 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal11g0258 359 SMART sant 13 63 IPR001005 -
Lal11g0258 359 SMART sant 66 114 IPR001005 -
Lal11g0258 359 CDD SANT 71 112 IPR001005 -
Lal11g0258 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal11g0258 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal11g0258 359 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0258 Lal-Chr11 1845397 1847666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0258 1 336 MYB Transcription Factor Family AT5G49330 43.056 5.91e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal11g0258 Myb_DNA-binding 4.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0258 K09422 - gmx:100819041 451.44