Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0215 ATGGACATGAATGAAGGGCATGGTGCTGAAGAGTTGTTTCAGGCACAAACCCATTTGTATAACTACACTTATAATTACATTGGTTCCATGTGCCTCAAAAGTGCTGTTCATTTAGGAATACCAGACATAATACACAATCATGGAAAACCCATCACCATCCCTCAACTGGTTTCAGCACTCAAAATCCAACCTACTAAATCTACTCATGTATATAGGATCATGCGTTTGTTAGTTCATGCTGGTTTTTTTACCACGTCAAAGGTTGTCCAAGATGAAAAAGAAGAAGTGGTGTATGATCTAACACTATCTTCTAGGCTTCTTATCAAAGATAATATCCCACCTATGTCTCCTTATGTGAAAGCAATGTTTCATCCAGCTTTGTATCATTCATCAGAGTTTTTGGGAGAATGGTTTCATACAAATGATGAAGTCACACCCTTTGAAACTGCTTATGGTATGAGCTATTGGGACTATTTAAGCAAAAACCAAGAGTTTAATAGCATATTCAATGAAGCAATGATTAGTGATTCTGGGATGATGAATTTGGTGATCAAAGATTGTAATACTGTTTTTGAAGGATTGAATTCATTGGTTGATGTTGGAGGTGGTAAAGGAGCTGTAGGAAGGATAGTTTCTGAGGCACTGCCTAATTTGCAATGGACAGTGCTGGATCTTCCACATGTTGTTGACAATTTGCAAAATACCAACAATTTGAAATTTGTTGGAGGTGACATGTTTCACTCTATTCCTTCAGCTGATGCCATTCTTCTTAAGTTAGTGTTGCATGCTTTTAATGATGAAGACTGTGTTAAAGTGCTGAAGAAGTGTAGAGAAGCTATTTCAAGCAAAGGGAAAGAAGGAAAAGTAATTATCATAGATATAGTGATCAATGAGAAGAATGATAAACATGAATTAATGGAATCAAAGCTATATTTTGATGTGTTAATGATGGTTGTGGTCACTGGAAGGGAAAGAGAAGAACATGAATGGGAAAAGCTTTTCTTGGAATCTGGATTCAGTCACTACAAGATAACACCAATCTTTGGCATGAGGTCCTTGATTGAAGTTTATCCTTGA 1077 0.3658 MDMNEGHGAEELFQAQTHLYNYTYNYIGSMCLKSAVHLGIPDIIHNHGKPITIPQLVSALKIQPTKSTHVYRIMRLLVHAGFFTTSKVVQDEKEEVVYDLTLSSRLLIKDNIPPMSPYVKAMFHPALYHSSEFLGEWFHTNDEVTPFETAYGMSYWDYLSKNQEFNSIFNEAMISDSGMMNLVIKDCNTVFEGLNSLVDVGGGKGAVGRIVSEALPNLQWTVLDLPHVVDNLQNTNNLKFVGGDMFHSIPSADAILLKLVLHAFNDEDCVKVLKKCREAISSKGKEGKVIIIDIVINEKNDKHELMESKLYFDVLMMVVVTGREREEHEWEKLFLESGFSHYKITPIFGMRSLIEVYP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0215 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
Lal11g0215 358 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Lal11g0215 358 PANTHER ASMT2 7 358 - -
Lal11g0215 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Lal11g0215 358 Gene3D - 2 107 IPR036388 -
Lal11g0215 358 Pfam O-methyltransferase domain 134 340 IPR001077 GO:0008171
Lal11g0215 358 PANTHER O-METHYLTRANSFERASE 7 358 IPR016461 GO:0008168
Lal11g0215 358 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Lal11g0215 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 357 IPR029063 -
Lal11g0215 358 Gene3D Vaccinia Virus protein VP39 109 358 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0215 Lal-Chr11 1579432 1583308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0215 30 356 Monolignol Biosynthesis Gene Families AT5G54160 33.929 7.65e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0215 K22588 - qsu:112018723 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0215 11 1579432 1583308 Lal11g0215 11 1579432 1583308 ECH
Lal5g1239 5 15141139 15143990 Lal11g0215 11 1579432 1583308 LSH