Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0214 ATGGGTTTGATTGATCTTAACACTACAGAAGATGATGAAACTCTATCATCTTCTTCTCTCTCCTCTCACTCTGGTATAAGCACTTGTGCTTCTGCTTTGCCTCCTTCTGTTCCTTCTTCTGTGTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTATGATCTGTCTTCCCAAGAAAGGAAGTGTTGTTGTTTATTTCCCACAAGGCCACTTTCAGCAACATCCTCAGGATTTTCCAATCACTGGTTATAACATCTCACCACATGTTTTCTGTCGTGTGCTTGATGTTAAGCTTCATGCAGAGGAAGGGAGTGATGAAGTGTATTGCCAGCTCTTGTTAATTCCTGAAAGTGAGCAAATGGAACAAAACTTGCCGGAAGGGGTAATTAATGCTGATGGTGAAGAGGAGGATGCTGAAGCTATAGTGAAGTCAACAACACCTCATATGTTCTGCAAAACTCTGACTGCTTCTGATACCAGCACTCACGGAGGATTTTCTGTTCCTCGTCGAGCAGCAGAAGATTGCTTCCCTCCCCTGGATTACAGTCAACAAAGACCTTCACAAGAGCTTGTGGCAAAGGATCTGCATGGCCAAGAATGGAGGTTCCGGCATATATACCGGGGGCAGCCACGGAGGCATTTGCTCACAACTGGATGGAGCGCGTTTGTGAACAAGAAGAAGCTTGTGTCTGGCGATGCCGTGTTATTTCTGAGGGGTGAGGATGGAGAACTGAGATTAGGGATTCGTAGGGCAGCTCAACTGAAGAGTGGAACATTTGCAGTTCCCTCCAGTCAGCAATTGAATCCTAGTACTCTTGTGGATATTGTTAATGCTTTGTCTACACGATGTGCCTTTCGTGTTTGCTATAATCCAAGGGTCAGCTCATCAGAATTTATCATACCACTCCACAAATTCTCAAAGAGCCTTGATTGTTCTTATTCAGTTGGTATGAGGTTCAGGATGCGCTTTGAAACTGAAGATGCAGCAGAGCGAAGATTCACAGGATTAATTGCTGGAATTAGTGATGTGGATCCTGTTCGATGGCCTGGATCGAAATGGAGATGCCTACTGGTAAGGTGGGATGACATGGAAGCTGCTAGGCATAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCCACTACCAATAACTTGATGGCTGCTAGTTTGAAGAGGAGCAGAATTGGGTTGAGTTCGGAGAAGCTAGAATTTCCAGTTCCCAATGGGATTGGAGCCCCAGACTTTGGGGAATCATCAAGATTCCGGAAGGTCTTGCAAGGTCAAGAAATGTTCAGTGTTAATACTCCCTTTGATGGTATAAATGCTCAGAATCCCCGATTATCTGAGTTAGGGAGATGCTATCCTGGTTCAAACTGTTCCGGGTTTGCTGCAACAGGAAATAATGTCAGAATCCCACAAGTGAGTTCTGATTTTTCCTGCAACGGCATAGGCTTCAGTGGATCTTATGGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGACGAGCCTTGTCTATGGATGAGGCTCGCGGAAATGGTCGATTTGGACTCTTTGATGGTTATCATCATCCAATGCTTACCTCCAGAAATGGATGGTCTGCTCAGATGCATGATAACTCTTCACATTTGCATGCATCGGTTCAAACAGGGCATGTGTCATCTCCATCGTCTGTGTTAATGTTCCAACAAGCAGTCAATCCAGTTTCAAACGCTGACTATAATAGCAAACACAACCAAGGGGCTAATATCCATTACCGCAGTTTATATGCTACTAAAGTGAACGGTGGAGTTTCTGCAACTTCCCCATCTGTTGAGCCTATTTACTCCGGGCATGCTCAGGAAGCCACAAATTCTTTTGATATGTTTAATCTGCATAGTCAGCTGGGTGGTTCTAGGTCATATGAATCAGTGTCAGCACTTAGAGGCAGTCAAGAAATGGCTTCCTCACGTAAAAGTAGCTGCAGACTCTTCGGTTTTTCGTTAACTGAAGACAGACTCATTGCAAATAAAGAAGCTGATCCTTCTTCAGCCACTTGTCAATTGAATTCTGGACCTATTGAAGATGAGTTTCACCCTGGCCGTTCTCTCAGGAATAAGGCGGTTGGCAGTAACTGCACTAATGGTGTGTTGCAGTATTAA 2166 0.4469 MGLIDLNTTEDDETLSSSSLSSHSGISTCASALPPSVPSSVCLELWHACAGPMICLPKKGSVVVYFPQGHFQQHPQDFPITGYNISPHVFCRVLDVKLHAEEGSDEVYCQLLLIPESEQMEQNLPEGVINADGEEEDAEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGTFAVPSSQQLNPSTLVDIVNALSTRCAFRVCYNPRVSSSEFIIPLHKFSKSLDCSYSVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDMEAARHNRVSPWEIEPSGSASTTNNLMAASLKRSRIGLSSEKLEFPVPNGIGAPDFGESSRFRKVLQGQEMFSVNTPFDGINAQNPRLSELGRCYPGSNCSGFAATGNNVRIPQVSSDFSCNGIGFSGSYGFQKVLQGQEILPSQPYGRALSMDEARGNGRFGLFDGYHHPMLTSRNGWSAQMHDNSSHLHASVQTGHVSSPSSVLMFQQAVNPVSNADYNSKHNQGANIHYRSLYATKVNGGVSATSPSVEPIYSGHAQEATNSFDMFNLHSQLGGSRSYESVSALRGSQEMASSRKSSCRLFGFSLTEDRLIANKEADPSSATCQLNSGPIEDEFHPGRSLRNKAVGSNCTNGVLQY 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0214 721 SUPERFAMILY DNA-binding pseudobarrel domain 143 256 IPR015300 -
Lal11g0214 721 MobiDBLite consensus disorder prediction 9 23 - -
Lal11g0214 721 PANTHER AUXIN RESPONSE FACTOR 33 721 - -
Lal11g0214 721 MobiDBLite consensus disorder prediction 1 23 - -
Lal11g0214 721 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 33 721 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal11g0214 721 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Lal11g0214 721 SMART B3_2 150 252 IPR003340 GO:0003677
Lal11g0214 721 Pfam Auxin response factor 276 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal11g0214 721 Gene3D - 148 252 IPR015300 -
Lal11g0214 721 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Lal11g0214 721 CDD B3_DNA 148 250 IPR003340 GO:0003677
Lal11g0214 721 MobiDBLite consensus disorder prediction 681 704 - -
Lal11g0214 721 Gene3D - 312 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0214 Lal-Chr11 1543995 1550264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0214 39 503 B3 DNA Binding Superfamily AT5G60450 49.482 1.39e-144 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal11g0214 B3 9e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0214 K14486 - gmx:100789906 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0214 11 1543995 1550264 Lal11g0214 11 1543995 1550264 ECH
Lal3g0099 3 610115 616263 Lal11g0214 11 1543995 1550264 LSH