Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0203 ATGGCACCGAAAACGGGTAGAGTTAATGTGAATGGTAACGATGTGAAAGAGATGCATTTTCGTGGAGTTAGAAAGAGACCTTGGGGTAGATATGCGGCTGAGATCAGAGATCCAGCTAAGAAGACTCGTGTTTGGCTTGGCACCTTTGACACGGCGGAAGAAGCGGCACGAGCCTACGACGACGCCGCACGTGACTTCCGTGGTCCTAAAGCCAAAACAAATTTCTCTCTCCCTTCCGTCGAGGATAATAATCTCAACACCCCTAGCCAGAGCAGCACCGTCGAATCCTCCAGCCGCGACCGTGATCGTGATCGTGATCACGAATCGCCGCTTGTTATATCTGATTCTTCTACGTTCGACCTTAACTTTGTCCCTTCAACCGTCACTTTCCCCTTCCAACACCAGCTCACCGCCGTGCCGGCTGAGAACAAGGTTTTGTTCTACGATGCGGTGCTACGCGGTGGTTTGGTCGGTTCCAGGTTCGATTATAATAATATGGTGGCGGCGAGTGAGTTCCACGTGGCATCAGGAACACAAAGCAATTCAGACTCGTCCTCCGTCATCGATCTGAACCACGAAGAGCGTGATCTGAAGTCTACAACAGTTTTTGATATTGACCTTAACCAACTTCCTCCACAGGAATACGAAGCTTAG 654 0.5015 MAPKTGRVNVNGNDVKEMHFRGVRKRPWGRYAAEIRDPAKKTRVWLGTFDTAEEAARAYDDAARDFRGPKAKTNFSLPSVEDNNLNTPSQSSTVESSSRDRDRDRDHESPLVISDSSTFDLNFVPSTVTFPFQHQLTAVPAENKVLFYDAVLRGGLVGSRFDYNNMVAASEFHVASGTQSNSDSSSVIDLNHEERDLKSTTVFDIDLNQLPPQEYEA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0203 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 2 197 - -
Lal11g0203 217 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Lal11g0203 217 MobiDBLite consensus disorder prediction 96 111 - -
Lal11g0203 217 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Lal11g0203 217 CDD AP2 19 75 IPR001471 GO:0003700|GO:0006355
Lal11g0203 217 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Lal11g0203 217 SUPERFAMILY DNA-binding domain 19 76 IPR016177 GO:0003677
Lal11g0203 217 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Lal11g0203 217 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Lal11g0203 217 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Lal11g0203 217 MobiDBLite consensus disorder prediction 70 111 - -
Lal11g0203 217 MobiDBLite consensus disorder prediction 76 95 - -
Lal11g0203 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0203 Lal-Chr11 1451601 1452254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0203 16 126 AP2-EREBP Transcription Factor Family AT5G44210 57.983 3.15e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal11g0203 AP2 5.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0203 K09286 - gmx:100170742 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0203 11 1451601 1452254 Lal11g0203 11 1451601 1452254 ECH
Lal9g0526 9 3521335 3521907 Lal11g0203 11 1451601 1452254 ECH
Lal2g0593 2 3553399 3553986 Lal11g0203 11 1451601 1452254 ECH
Lal20g0345 20 2793038 2793670 Lal11g0203 11 1451601 1452254 ECH
Lal11g1443 11 17792456 17793061 Lal11g0203 11 1451601 1452254 ECH
Lal5g1719 5 19315325 19315897 Lal11g0203 11 1451601 1452254 LSH