Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0202 ATGTTGATGGCTTCATCTTCTGCATCACGTGAAGGACACTACAGAGGAGTTAGAAAGAGACCATGGGGTCGTTACGCTGCTGAGATACGTGATCCTTGGAAGAAGACACGTGTTTGGTTAGGAACTTTTGATACTCCTCAAGAAGCTGCACTTGCTTACGACGGCGCCGCTCGTTCCCTCCGTGGAGCTAAGGCTAAGACCAACTTTCCTCCGCCACCGTTACCTCCTCCTGGACTTTGCCTTGACCTTAACGTTCCTTCATCTGTACTTCATTCTCGTACACCTTTACTCACTGATTTTCTTCACACCGGTGTTCTCAAAGGTGTTGATCCCATACCTCTTCTTCCTCCGCCGCCGCCGCCGCCGCTTCTGCAGATGCCTCACCACCATAGGGTTGCTGTTGGAGGTGGAACTCAGGTTGGTGAGAGTTCAGAAACGGCGTCGTATATGGGTCTCGTTCGACGTGGCATTCCCATCGATCTGAATGAACCTCCACCATTTTGGCTTTGA 510 0.5118 MLMASSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPQEAALAYDGAARSLRGAKAKTNFPPPPLPPPGLCLDLNVPSSVLHSRTPLLTDFLHTGVLKGVDPIPLLPPPPPPPLLQMPHHHRVAVGGGTQVGESSETASYMGLVRRGIPIDLNEPPPFWL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0202 169 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Lal11g0202 169 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Lal11g0202 169 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Lal11g0202 169 CDD AP2 13 69 IPR001471 GO:0003700|GO:0006355
Lal11g0202 169 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Lal11g0202 169 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 157 - -
Lal11g0202 169 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Lal11g0202 169 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Lal11g0202 169 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Lal11g0202 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 8 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0202 Lal-Chr11 1437228 1437737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0202 3 169 AP2-EREBP Transcription Factor Family AT1G28360 47.549 6.53e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal11g0202 AP2 6.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0202 - - gmx:100798369 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0202 11 1437228 1437737 Lal11g0202 11 1437228 1437737 ECH
Lal5g1720 5 19331164 19331661 Lal11g0202 11 1437228 1437737 LSH