Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0200 ATGCCTCTCTCTCATTCTCCAATCGCCGATGATAGCGATAACGATCCTTCAATGGAAGAAGATGATCCCGAGGAAGAAGATGTAGAAGAAGAGGTCGAAGAAGAGGAGGTAGAAGATGATGATGAAGATGAAGAAGAGGAGGTAGAAGAGGAAGAAGAGGTGGAATATGAAGAAGAGGTAGAAGAAGAAGAGGAAGTCGAAGAAGAAATCGAAGAAGACGTCGAAGAAGAAGAGGTCGAAGAAGAAGAGGTTGAAGAAGAAGAGGAGGAGGAGGATGAGGAAGAAATTGTAGAGGAGGAGGAAGAAGAAGCTGTAGAGGAAGATAAAGTGATAGTTGAAGATGAATCACGTGCACCTGATAACGATCGAATAGGTTCATGCCCACATATGGAGTCTGCGGGGCAAGATGGGAACTTGAAGCCGATTTCTTCCATGACAGAAAATAATGAATTAATTCCATCATCTAGTATGCATTCATCGGAAAAGAATGAAGCCATGCTCAAAGCATCTGTTCCTTCATGTGAGACACTAACTTTGAACAAGGAGGAGATTCATCCAAAACATGAAATTTCAAGTAATCCAAAGTCAAGAGAAAACACCACTATTGTCAAAGGTGACAACATTCAAGGACTGAATGTTGATACTGAGAATGCTGGATCCCTTCCACAAAGTAAAACCTTTGTCAGATGCAATGAACTAAGTTGCAATAACGAAGCTGATTTATGTGGGGGTGAGGATATGGATACTAGGGCCACCAAGTCATCCAATGATACTGGAAAAGATGTGGCTATTGGCCTCCCAGAGAGAGATGACTTTGTCAAGGATGCTGATGATGGGCAGAAGTCAAAGAACGAAGTCATGTTGTCGGAGATGGAGACTAGTGACAGTGTGAAGGAAAAGACACCAAGGAGGACTAGAAGTGGGTCTCCCAATGCTGAGATAAAAGATGGAAACAAACGCCTCAGACTCGTATGTGATTTTTTTGCTAAAGGGTGGTGCATCAGAGGTAGTTCTTGTAGGTTTCTTCATATAAAAGATCCTGTGAATAATACTGACCAGGAGACTGATGGAGACTCAATTACTGCAAATCAGAAGAGAGAATTGGAATTGAAAGAAGGTGTTAGGGGCAATGTTGAGAGATCAAAGACGAATGAACAAGAAGCAAGCCCAACTTGGCATCCATCTCAAGAAAAACAGAAGTTTCCTTTTAGGGACAACTTGCTTCAAGAGAGTAGATTTGCATTTAATGCATCAAACAACTATTTCAACACAAATCACTCTTCCTATTCAACCCATTCAGAGGGAATGGCAACTGCTCGAAACCAACATATGTACAATGGATATACTTCCGCTGTTTTCAGTCATTCACCTAATTCAGGCCTGGCTGCTCAATTTCCAGCTACAAGCATGTCACTGTCCCACCGGTCAGGAATTTCACTGCCTTTTAGCTCATCATACACTGACAGAGACTATCATGCACCTAGGTCCACTTTCTCTATTTCAGGACAGGAGCCTCTAGGTAGTTCTTCATCCAGGGGTCCACCACATTCCTCTGGATATAAATCGAATGTCGACTCTTATGATTGGGAACCTTCTGTACCATTTCAACCATCCTTTTTTATTACTTCTATGAGTGTATCATCCCCTGGAGATCCGTATGACCCGCTTCGTGATAGCATTGAGATACCTAATATAGGAGATGGGTCTTTGAAAGCTTCCCTTTTAATTCGCAGACCATCTGTCGAGGCTCCACCACAGGTGCAGACATATGGTGATTCTGCTGTACTTGGGAAACACAAGTCTGATGTTAATGATGCCAAAAGTTCTGTATCTTCTCATATTAGAATTAATGAAAATGAGTTAAGCAAAAGATCTGTTCCTCATGAAAAAGATTGCCTTGTGACTGAAGCAGAGATAACATCAGGGACTGATGAAAATTACCAAAACAGTAAAATAGGCATGGAACAATATACCACTGATGTCGAAGATTTTACGACAATGGAGAAAGAAAGGACTGGACGTGATACTAGACATCATGGCGAAGGATCAGGGCACAAGAGGAGGAGAGTAGACAGGGATAAGAAAATTAGTGAAATGGATGTTGACTTCGTGCTGGGGAAAGAATCGAAGGCCCTAAAAAATTTCCATGCAGTACTTGTTGATCACGTCAAAGAGTTGTTAAAACCATATTGGCATGAGGGTCATCTAAGTAAGGATACACATATTGTAATAGTCAAAAAATCTGTTGACAAGGTTATTAGCACTTTAGAGCCCCACCAGATTCCAACCACCATAGATACTGCAAAACATTATGTTTCTTCATGTCGAGTGAAAATTGCAAAGCTGGTTGATAGATTTCTTTTTTGCAGGGATACATCAATAAATATAGCAAGTCTTGATATGCTAGCTCCAACACCTTCGTTGTACAGTTTTTGA 2436 0.4122 MPLSHSPIADDSDNDPSMEEDDPEEEDVEEEVEEEEVEDDDEDEEEEVEEEEEVEYEEEVEEEEEVEEEIEEDVEEEEVEEEEVEEEEEEEDEEEIVEEEEEEAVEEDKVIVEDESRAPDNDRIGSCPHMESAGQDGNLKPISSMTENNELIPSSSMHSSEKNEAMLKASVPSCETLTLNKEEIHPKHEISSNPKSRENTTIVKGDNIQGLNVDTENAGSLPQSKTFVRCNELSCNNEADLCGGEDMDTRATKSSNDTGKDVAIGLPERDDFVKDADDGQKSKNEVMLSEMETSDSVKEKTPRRTRSGSPNAEIKDGNKRLRLVCDFFAKGWCIRGSSCRFLHIKDPVNNTDQETDGDSITANQKRELELKEGVRGNVERSKTNEQEASPTWHPSQEKQKFPFRDNLLQESRFAFNASNNYFNTNHSSYSTHSEGMATARNQHMYNGYTSAVFSHSPNSGLAAQFPATSMSLSHRSGISLPFSSSYTDRDYHAPRSTFSISGQEPLGSSSSRGPPHSSGYKSNVDSYDWEPSVPFQPSFFITSMSVSSPGDPYDPLRDSIEIPNIGDGSLKASLLIRRPSVEAPPQVQTYGDSAVLGKHKSDVNDAKSSVSSHIRINENELSKRSVPHEKDCLVTEAEITSGTDENYQNSKIGMEQYTTDVEDFTTMEKERTGRDTRHHGEGSGHKRRRVDRDKKISEMDVDFVLGKESKALKNFHAVLVDHVKELLKPYWHEGHLSKDTHIVIVKKSVDKVISTLEPHQIPTTIDTAKHYVSSCRVKIAKLVDRFLFCRDTSINIASLDMLAPTPSLYSF 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0200 811 MobiDBLite consensus disorder prediction 374 400 - -
Lal11g0200 811 Coils Coil 25 109 - -
Lal11g0200 811 MobiDBLite consensus disorder prediction 181 202 - -
Lal11g0200 811 SUPERFAMILY CCCH zinc finger 319 343 IPR036855 GO:0046872
Lal11g0200 811 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 34 784 - -
Lal11g0200 811 MobiDBLite consensus disorder prediction 263 285 - -
Lal11g0200 811 MobiDBLite consensus disorder prediction 292 314 - -
Lal11g0200 811 MobiDBLite consensus disorder prediction 13 109 - -
Lal11g0200 811 MobiDBLite consensus disorder prediction 494 523 - -
Lal11g0200 811 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 34 784 - -
Lal11g0200 811 Gene3D - 315 404 - -
Lal11g0200 811 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 324 343 IPR000571 GO:0046872
Lal11g0200 811 MobiDBLite consensus disorder prediction 250 314 - -
Lal11g0200 811 SMART c3hfinal6 320 345 IPR000571 GO:0046872
Lal11g0200 811 MobiDBLite consensus disorder prediction 110 124 - -
Lal11g0200 811 ProSiteProfiles Zinc finger C3H1-type profile. 319 346 IPR000571 GO:0046872
Lal11g0200 811 MobiDBLite consensus disorder prediction 1 167 - -
Lal11g0200 811 MobiDBLite consensus disorder prediction 669 692 - -
Lal11g0200 811 MobiDBLite consensus disorder prediction 137 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0200 Lal-Chr11 1415633 1420049 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal11g0200 zf-CCCH 6.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0200 - - lang:109334316 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0200 11 1415633 1420049 Lal11g0200 11 1415633 1420049 ECH