LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal11g0194	ATGAAGTTCAACATTGCAAATCCCACCACTGGATGCCAGAAGAAGCTGGAGATCGATGATGACCTCAAGCTCCGAGCATTCTGGGACAAGAGGATCTCACAAGAGGTTCTTGGCGATGCTCTTGGCGAGGAATTCAAAGGCTATGTCTTCAAAATCACTGGAGGGTGTGACAAACAAGGGTTTCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGTCTCTTGCTCTACAGAGGAACTCCTTGTTTCCGTGGATATGGAAGACGCAATGGAGAGCGTAGGAGAAAGTCTGTACGTGGGTGCATTGTTAGTCCAGATCTCTCTGTTCTGAACTTGGTGATTGTGAAGAAGGGTGACAATGATTTACCAGGCTTGACAGACATTGAAAAGCCAAGAATGAGGGGTCCTAAAAGAGCATCCAAAATCCGTAAGCTGTTTAACCTGTCCAAGGAAGATGATGTGAGGAAGTATGTCAACACATATCGGCGAACATTCACAACCAAAAATGGGAAAAAGGTGAGCAAAGCTCCAAAGATACAACGACTGGTCACTCCTCTGACACTTCAAAGAAAGAGGGCAAGAATTGCAGATAAGAAGAAGAGAATTGCGAAAGCAAAATCAGATGCAGCAGAGTACCAGAAACTTCTGGCCTCCAGATTGAAGGAGCAGAGAGAACGCCGCAGTGAGAGTCTGGCCAAGAAGAGATCAAGGCTGTCTAGTGCTACCAAGCAACCTGCCACAGCATAG	750	0.468	MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSDAAEYQKLLASRLKEQRERRSESLAKKRSRLSSATKQPATA	249

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal11g0194	249	PANTHER	40S RIBOSOMAL PROTEIN S6	1	246	-	-
	Lal11g0194	249	SMART	Ribosomal_S6e_2	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Lal11g0194	249	MobiDBLite	consensus disorder prediction	220	249	-	-
	Lal11g0194	249	Coils	Coil	189	216	-	-
	Lal11g0194	249	Pfam	Ribosomal protein S6e	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Lal11g0194	249	Gene3D	-	133	234	-	-
	Lal11g0194	249	PANTHER	40S RIBOSOMAL PROTEIN S6	1	246	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Lal11g0194	249	PIRSF	RPS6e	1	249	IPR014401	GO:0003735\|GO:0005840\|GO:0006412
	Lal11g0194	249	ProSitePatterns	Ribosomal protein S6e signature.	52	63	IPR018282	GO:0003735\|GO:0005840\|GO:0006412
	Lal11g0194	249	MobiDBLite	consensus disorder prediction	220	237	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal11g0194	Lal-Chr11	1377466	1380371	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal11g0194	1	249	Cytoplasmic Ribosomal Protein Gene Family	AT5G10360	72.289	3.01e-120	339

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal11g0194	K02991		-	gmx:100801194	442.58

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal5g1725	5	19362857	19365225	Lal11g0194	11	1377466	1380371	LSH
	Lal16g0678	16	4389522	4391749	Lal11g0194	11	1377466	1380371	PCT
	Lal15g0631	15	4352762	4355376	Lal11g0194	11	1377466	1380371	PCT
	Lal23g0941	23	11520722	11523536	Lal11g0194	11	1377466	1380371	PCT
	Lal11g0194	11	1377466	1380371	Lal16g0678	16	4389522	4391749	PCT
	Lal11g0194	11	1377466	1380371	Lal15g0631	15	4352762	4355376	PCT
	Lal11g0194	11	1377466	1380371	Lal23g0941	23	11520722	11523536	PCT