Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0193 ATGCCACTTAATCCTTCCTTTCAATTCAACACAACACTCATTGGATTTTTATCACTTTCAATTCAACTAATAGTGATGCCTCCAAATAGTGATGATAACCTGGAATGGAACGCTGATAAATTGCTTCGAATTTATTTGCTTGATTACTTCCTTAAAAGGGGATTCCACCACACTGCTCAGATTTTCAAGGAAGAAGGAGATATCTCTATCAATGATTCCATTACTCTGCATTCTTCTTATATCCCGGTAACAATGGAACTCCCCAGTGGTTGGAGGCTCGCAGTATGGTCCAACATAAGCGAGATTGATTCTCCTGTTGGATTCCTGTATGAATGGTGGTGTCTTATGTATGATGTATATAAGTCTAGGACTGTGCCAAAATCCTCTAGTAAGAAGACATATAATGCAAGGAATAGTAATTTCTATCCTCAAATACCAGCCACTGGTCCAATACCTTCAACACTGTACAATAGAGGACATGGATATCTGGAGGCACATGCTGAATTGATGGATCTTTTCAAAGAATGTAACATGAAGTTCCCTGGAGTTGAAACCAATGAAGCTCACAATTTAATGAAGAGCGGAAAGAGAAAGAAAACAGCATCCTTACAACCTGCACACAGCACCCAAGTAGTTTTTCCATTTAAAGAGGTTGGCTGCCTTCATTCAAGCAAAAACAAGGTTTTGTCCAGCCATTTTTCACCTGATGGAAAGGTTTTGGCAAGTGCTGGACATGAGAAAAAGGTTTTCATCTGGAACTTGGAAAATTTTGAGTGTGTCACTACCCCAGAAGAACACTCACTTCCCATCACAGATGTTCGGTTCAGAACAGATTCAACTATATTTGCAACGTCCTCCTTTGATACATCTATAAGACTATGGGATGCAGCCAAACCAATCAGATCGATGCTCAAACTTGATGGGCATGCTGGTCAAGTAATGTCATTGGATTTCCACCCAAGAAGGGTTGACCTCCTTTGCTCGTCTGATAGCAATGATGTAATTCGACTATGGGATGTTGAAGAAGGTGCATGCTTGCATATCTCTAAGGGAGGTAGTAAACAAGTCAGATTTCAGCCTTGTGGGAAGTTTCTTGCTACTGCAACAGGAAATGATATCAAGTTAGTTGACGTTGAGGCTGATAGCATTGTACGCGATCTAAAGGGACATGTTTCAGACGTTCTTTCCATCTGTTGGGATAGAAGTGGAGAACACATTGCCTCTGTTAGTGAAGATAGTGCACGTATTTGGTCATTAGATGGAGAATGCATCTACGAATTACATTCAACTGGAAACAGGTTTCAATCATGCATATATCATCCAGCATATCCTAACCTCCTAATTATTGGTGGCTATCAGACTCTGGAATTTTGGAGTCCATCCGCCGGCAATAAAACGTATGTCGTCGCAGCACACAAGGGATTAATTGGTGGATTAGCAGAATCACCCCATGATGAATTGATTGCCTCAACTAGCTATGATTGTTGCGTGAAACTATGGAAATAA 1506 0.4064 MPLNPSFQFNTTLIGFLSLSIQLIVMPPNSDDNLEWNADKLLRIYLLDYFLKRGFHHTAQIFKEEGDISINDSITLHSSYIPVTMELPSGWRLAVWSNISEIDSPVGFLYEWWCLMYDVYKSRTVPKSSSKKTYNARNSNFYPQIPATGPIPSTLYNRGHGYLEAHAELMDLFKECNMKFPGVETNEAHNLMKSGKRKKTASLQPAHSTQVVFPFKEVGCLHSSKNKVLSSHFSPDGKVLASAGHEKKVFIWNLENFECVTTPEEHSLPITDVRFRTDSTIFATSSFDTSIRLWDAAKPIRSMLKLDGHAGQVMSLDFHPRRVDLLCSSDSNDVIRLWDVEEGACLHISKGGSKQVRFQPCGKFLATATGNDIKLVDVEADSIVRDLKGHVSDVLSICWDRSGEHIASVSEDSARIWSLDGECIYELHSTGNRFQSCIYHPAYPNLLIIGGYQTLEFWSPSAGNKTYVVAAHKGLIGGLAESPHDELIASTSYDCCVKLWK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0193 501 Gene3D - 354 501 IPR015943 GO:0005515
Lal11g0193 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Lal11g0193 501 Pfam WD domain, G-beta repeat 222 253 IPR001680 GO:0005515
Lal11g0193 501 Pfam WD domain, G-beta repeat 258 295 IPR001680 GO:0005515
Lal11g0193 501 Pfam WD domain, G-beta repeat 304 339 IPR001680 GO:0005515
Lal11g0193 501 Pfam WD domain, G-beta repeat 384 418 IPR001680 GO:0005515
Lal11g0193 501 Pfam WD domain, G-beta repeat 465 501 IPR001680 GO:0005515
Lal11g0193 501 ProSiteProfiles LIS1 homology (LisH) motif profile. 38 70 IPR006594 GO:0005515
Lal11g0193 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 348 IPR001680 GO:0005515
Lal11g0193 501 SUPERFAMILY WD40 repeat-like 211 501 IPR036322 GO:0005515
Lal11g0193 501 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 295 - -
Lal11g0193 501 SMART WD40_4 342 377 IPR001680 GO:0005515
Lal11g0193 501 SMART WD40_4 380 418 IPR001680 GO:0005515
Lal11g0193 501 SMART WD40_4 256 295 IPR001680 GO:0005515
Lal11g0193 501 SMART WD40_4 214 253 IPR001680 GO:0005515
Lal11g0193 501 SMART WD40_4 420 459 IPR001680 GO:0005515
Lal11g0193 501 SMART WD40_4 299 339 IPR001680 GO:0005515
Lal11g0193 501 SMART WD40_4 462 501 IPR001680 GO:0005515
Lal11g0193 501 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 343 - -
Lal11g0193 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 469 501 IPR001680 GO:0005515
Lal11g0193 501 ProSitePatterns Trp-Asp (WD) repeats signature. 326 340 IPR019775 -
Lal11g0193 501 CDD WD40 217 501 - -
Lal11g0193 501 Gene3D - 180 353 IPR015943 GO:0005515
Lal11g0193 501 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 256 - -
Lal11g0193 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 295 IPR001680 GO:0005515
Lal11g0193 501 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 469 501 - -
Lal11g0193 501 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 36 173 IPR044716 GO:0003714
Lal11g0193 501 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 203 501 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0193 Lal-Chr11 1372207 1376941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0193 167 419 U-box Gene Family AT2G33340 25.000 3.01e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lal11g0193 WD40 0.016 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0193 - - lang:109345600 498.819