Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0173 ATGTCTGATACCGAAAATCTCGCTCCCTTTCGTTCTCCTTCATCCCCCGACGAGCCAATTTCTCGAGGATCTGCTCGCGAGAGTTTGAGGATGAGAAAGCGAGATGGAGAGAGGAAAACTTTTCATGACCGTCATCACAGAGATTATAGGGATAGTGGTTTTAATGGAAGGGGCAGATATGAAAGTTCTAATCATCAGCAAAGCCGTGACTATGATAGGCATAATGATCGTTTTCGAGATGGAGAAACCAGACACAAATATGGAGAGCATAGATCACGTTCAAGGAGGGAACATATATCACGATCCAGATCCCCTTCTCGTTCAGAGAGTAAAAGGACCTCTGGATTTGACATGGCACCACCTGCTACAGGTGTGACACCTGCCATTTCAGGGCAAATGCTGGGCATTACTAATATGATTCAAGGAACTGCACAAAATTTGTCATCATTTGGGATGTCACAGATTGGAGCGCTTTCCTTAATGCAAGTTCAACCGATGACACAACAGGCCACAAGGCACGCTCGACGAGTGTATGTTGGTGGGCTTCCTCCTTTGACTAATGAACAGGTAATTGCATCATTCTTCAGCCAAGTCATGACTGCTGTTGGGGGAAATTCTGCTGGAGCAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTTGCGTTTGTGGAGATGAGAACTGTCGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATAGGTGTTGCTGTTCGGGTTCGTAGGCCATCAGATTATAACCCTTCATTAGCTGCAGCTCTTGGTCCTAGCCAGCCAAGTCCATACCTTAACTTATCTGCTATTGGACTTTCTGTTGGTGCGATTGGTGGAATTGAGGGACTTGATCGCATTTTTGTGGGTGGGCTGCCATACTACTTTACTGAAGTACAAATAAGAGAATTGCTCCAATCTTTTGGTTCTCTTCGGGCTTTTGATCTCGTTAGGGATAAAGACACTGGAAATTCAAAAGGATATGGTTTCTGCATCTATCAGTGTATACAGGATCCAGCAGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTAAGGCGTGCTACCGTCAGTGGACATTCTAAAACAGAACAAGAGAACATCCTTGCACGGGCACAACAGCATATAGCTATCCAGAAATCAGTTTTGGAAGTTGGTGGGTTAAGTATTCCTGGAGTGGAAAGAGTTACAACAATTGATGAAAGCCCCACTAAAGTTTTATGCTTGACTGAGGCCATTACTACTGAACAATTGAGCAATGATGAAGAGTATGATGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGTACCTTGATGAATGTTGTTATTCCTCGTCCAAGTCAAAATGAAGAGCTGCCTTCAGGTGTTGGAAAGGTGTTCTTGGAGTACTCTGATAGTGCTGGTTCTTTAGCTGCAAAAACTGCACTAAATGGTAGGAAATTTGGTGGCAATACTGTGACAGCAGTTTATTATCCGGAAGAAAAATATCTTTGCATGGAGTATGATGTATGA 1569 0.4308 MSDTENLAPFRSPSSPDEPISRGSARESLRMRKRDGERKTFHDRHHRDYRDSGFNGRGRYESSNHQQSRDYDRHNDRFRDGETRHKYGEHRSRSRREHISRSRSPSRSESKRTSGFDMAPPATGVTPAISGQMLGITNMIQGTAQNLSSFGMSQIGALSLMQVQPMTQQATRHARRVYVGGLPPLTNEQVIASFFSQVMTAVGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIGVAVRVRRPSDYNPSLAAALGPSQPSPYLNLSAIGLSVGAIGGIEGLDRIFVGGLPYYFTEVQIRELLQSFGSLRAFDLVRDKDTGNSKGYGFCIYQCIQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQENILARAQQHIAIQKSVLEVGGLSIPGVERVTTIDESPTKVLCLTEAITTEQLSNDEEYDEILEDMRDECCKFGTLMNVVIPRPSQNEELPSGVGKVFLEYSDSAGSLAAKTALNGRKFGGNTVTAVYYPEEKYLCMEYDV 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0173 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 255 IPR000504 GO:0003723
Lal11g0173 522 CDD RRM3_U2AF65 420 508 - -
Lal11g0173 522 SMART rrm1_1 293 369 IPR000504 GO:0003723
Lal11g0173 522 SMART rrm1_1 176 251 IPR000504 GO:0003723
Lal11g0173 522 SMART rrm1_1 431 508 IPR000504 GO:0003723
Lal11g0173 522 Gene3D - 416 520 IPR012677 -
Lal11g0173 522 PANTHER RNA-BINDING PROTEIN 20 521 - -
Lal11g0173 522 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 24 520 IPR006529 GO:0003723|GO:0005634|GO:0006397
Lal11g0173 522 Gene3D - 170 267 IPR012677 -
Lal11g0173 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 373 IPR000504 GO:0003723
Lal11g0173 522 SUPERFAMILY RNA-binding domain, RBD 82 243 IPR035979 GO:0003676
Lal11g0173 522 SUPERFAMILY RNA-binding domain, RBD 293 511 IPR035979 GO:0003676
Lal11g0173 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 366 IPR000504 GO:0003723
Lal11g0173 522 MobiDBLite consensus disorder prediction 1 21 - -
Lal11g0173 522 MobiDBLite consensus disorder prediction 1 123 - -
Lal11g0173 522 MobiDBLite consensus disorder prediction 23 55 - -
Lal11g0173 522 MobiDBLite consensus disorder prediction 63 110 - -
Lal11g0173 522 CDD RRM1_U2AF65 174 253 - -
Lal11g0173 522 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 20 521 - -
Lal11g0173 522 CDD RRM2_U2AF65 292 371 - -
Lal11g0173 522 Gene3D - 289 391 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0173 Lal-Chr11 1196794 1206074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0173 294 501 Eukaryotic Initiation Factors Gene Family AT1G22760 26.190 9.63e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0173 K12837 - vvi:100243034 650.588