Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0154 ATGGGGACGGAGGTGGTAGGGAGGTGGGGAACCTGGGAGGAGCTCCTCCTTGGTGGGGCCGTTCTCCGCCATGGGACACGAAACTGGAACGTAGTCGCCGCCGAACTCCGGTCACGAACTCTTTTCCCTTACACTTTTACCCCTGAGGTTTGTAAAGCCAAGTATGAGGACTTACAACAGCAGTACTCTGGGAGCATGGCTTGGTTTGAGGAGCTTAGGAAGAAAAGAGTAGCAGAGTTGAAGAGAGCTCTAGAGCTATCTGAAGATTCAATTGGGTCTCTTGAATCAAAGATTGAATCCCTCAAGACTGGGAAGAAGAACGAGAAAAGAAATGATTGTGATGTTGACAATGAGTCAGATAGTCCTGAATTACATATGCCTACACCGAATTTGGAGAGAGTTGAATCTTCGACAAAAGAGATGTCAAAGGATGGACTTTCTGCTGGGAGTTTCACACATGAAACCAGGACAAACTGGTCTCCTGAATGCCAGGTTCCGGCGGTGTCTGCTGACAACATGGAGACTAAGCTTGAAACCGAGCAAGACAAAGTTGTGAATGTAGATAAGTCGGCACGTACTATATATGAAGTGCAAGGAGGATATTTTAAAAAGCGGAGAGGGAAGAGGAAGAGGAAGGAGTGCGGTAGAAATACTAAGGAAGCAAGTGTAGGAGAAAGCGACTTATTAGATTCAACCGATGTTCTATCTTGGTGTAAAGAAAGCTCTACCAGCAATTGCGGCGAACTTTTCAAATCATGTGGTGTAGATGATCAAAATAGAAACTCGAAAAGGGATGGAGTGGAATATGTTATGGATATTTTAGATTCTATATTCGAAACTAAAAGTGCCTCTACCTTCCGCCGAAGACTCGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGACGACACATGGATTTCGACACTATAAGATCAAGAATTAGCAGCCAAACAATTAAGTCAGGTATAGAAATTTTCAGAGACTTATTGCTACTCACTAACAATTCTCTAGTCTTCTATTCCAAGAGCACGCGCGAATATAAATCCGCTCTTCTGCTTAGAGACCTTGTCACCATAAAAATGAGGGAGAGTTTCAAGGATGTTAGAATCAGCAAAGTTACTCAAACTCATTGCTCTATAAAATTACATGCACATAGTAATAGTAATAATAATACTCATGTGAATGTGAAACCAAGAAGTGTAAGGCCAGGTAACAGAAAGATTGTTGCAAAGGCAATAGTAGTTGGTGGCAACAATTCTGCATCATTGGTTTCAGAAGGAACTAAGAAACCAAGTAAATCTGATTCACCATCTTCAGTGGAATCCTTACCTTTTAAGAAGAAAGCTTTTGGTAGACCAAAAAAAGTTGCACGTGGGACTTCAGGTCAAAGGCCTGCATTACCAATGAAGGGAAAGAAAAGGGTCATGGCTGGTAACTACGACACTAACCCTTTTGCTGAAGAAGAAGTCAATCCCTTCTCTAATCCGGGAAGTGTTGCTCTTGCCACAAATTCAAGGCTTGCACCTCTTAATCCTGAACCTTCTGGTTATAATTATGGCTATGGTGTGACAATCGGTATACCTCTGGATCCATCAATGGATTTGAAAAAGAAGGAAAAGGAACTCCGAGCCAAGGAGGCTGAATTGAGAAGACGGGAACAGGATGTCAAACTGAAAGAAGAAGAAGCTGCACGAGGTGCTCCTTTTCATGTACCAGCCCATCATTCTACAAATACAAACTCATTTGAACCAATGCTGTTTAGCTTGCAGCCTTGCACATTAAGTATCTTCAGTTCTGCTTTTACACTCTTGGAGTACTTGATCACATTTTATTTTGCAGCTGGAAATTCTCTTGACGAGAAGAATTGGCCACCATTTTTCCCAATTATCCATCATGATATCGCTAACGAAATTCCAATTCATCTCCAAAGACTGCAATATGTTGCATTTACTTCGTTGTTAGGATTAGTGTCATGCCTTACATGGAATATCTTAGCTGTCACCGCAGCTTGGATTAAGGGAGAAGGGGTTCCTGGAGCATATGTCCTATGGTATCGCCCATTATATCGTGCTTTTAGGACTAAAAGTGCTTTGAATTATGGATGGTTTTTCATGTTTTACATGCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTCAAAGGAAAATCCCTCACTATTGGAGAGGATTCTGACTCGGCTTTACATCAAACTGCTAGGCATGTTAGTGAGAATGGCATAAGTCTGGAATTTAATGTGTTCCATGTTTTCAAGATGCTGCTAGTAATTCTTTACTTCATTGGATTTGGATTATTCTGCCTTGAAATATTGATCAGCATCTGGATTATTCAGCAAGTGTATATGTACTTTCGCGGCAGCGGTAAGGCCGCCGAGATGAGGCATGAGGCTGCAAGAGGAGCAGTGAGGGCTGCATTTTGA 2457 0.42 MGTEVVGRWGTWEELLLGGAVLRHGTRNWNVVAAELRSRTLFPYTFTPEVCKAKYEDLQQQYSGSMAWFEELRKKRVAELKRALELSEDSIGSLESKIESLKTGKKNEKRNDCDVDNESDSPELHMPTPNLERVESSTKEMSKDGLSAGSFTHETRTNWSPECQVPAVSADNMETKLETEQDKVVNVDKSARTIYEVQGGYFKKRRGKRKRKECGRNTKEASVGESDLLDSTDVLSWCKESSTSNCGELFKSCGVDDQNRNSKRDGVEYVMDILDSIFETKSASTFRRRLDSQKRGRYKKMIRRHMDFDTIRSRISSQTIKSGIEIFRDLLLLTNNSLVFYSKSTREYKSALLLRDLVTIKMRESFKDVRISKVTQTHCSIKLHAHSNSNNNTHVNVKPRSVRPGNRKIVAKAIVVGGNNSASLVSEGTKKPSKSDSPSSVESLPFKKKAFGRPKKVARGTSGQRPALPMKGKKRVMAGNYDTNPFAEEEVNPFSNPGSVALATNSRLAPLNPEPSGYNYGYGVTIGIPLDPSMDLKKKEKELRAKEAELRRREQDVKLKEEEAARGAPFHVPAHHSTNTNSFEPMLFSLQPCTLSIFSSAFTLLEYLITFYFAAGNSLDEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFTSLLGLVSCLTWNILAVTAAWIKGEGVPGAYVLWYRPLYRAFRTKSALNYGWFFMFYMLHIGFCILAAVAPPIVFKGKSLTIGEDSDSALHQTARHVSENGISLEFNVFHVFKMLLVILYFIGFGLFCLEILISIWIIQQVYMYFRGSGKAAEMRHEAARGAVRAAF 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0154 818 Pfam SCAMP family 621 798 IPR007273 GO:0015031|GO:0016021
Lal11g0154 818 SMART bromo_6 263 367 IPR001487 GO:0005515
Lal11g0154 818 Pfam Bromodomain 273 351 IPR001487 GO:0005515
Lal11g0154 818 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 477 - -
Lal11g0154 818 MobiDBLite consensus disorder prediction 422 473 - -
Lal11g0154 818 MobiDBLite consensus disorder prediction 101 133 - -
Lal11g0154 818 CDD Bromodomain 268 362 - -
Lal11g0154 818 Coils Coil 533 565 - -
Lal11g0154 818 MobiDBLite consensus disorder prediction 101 121 - -
Lal11g0154 818 Gene3D - 258 383 IPR036427 GO:0005515
Lal11g0154 818 SUPERFAMILY Bromodomain 267 367 IPR036427 GO:0005515
Lal11g0154 818 Coils Coil 77 111 - -
Lal11g0154 818 CDD SANT 8 55 IPR001005 -
Lal11g0154 818 ProSiteProfiles Bromodomain profile. 278 348 IPR001487 GO:0005515
Lal11g0154 818 MobiDBLite consensus disorder prediction 422 442 - -
Lal11g0154 818 PANTHER BROMODOMAIN PROTEIN 1 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0154 Lal-Chr11 1009997 1019943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0154 477 817 Miscellaneous Gene Families AT1G11180 52.222 1.38e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal11g0154 SCAMP 4.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0154 - - gmx:100804245 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0654 16 4208472 4214315 Lal11g0154 11 1009997 1019943 PCT
Lal23g0965 23 11694483 11699438 Lal11g0154 11 1009997 1019943 PCT
Lal11g0154 11 1009997 1019943 Lal16g0654 16 4208472 4214315 PCT
Lal11g0154 11 1009997 1019943 Lal23g0965 23 11694483 11699438 PCT